Pool-seq data from laboratory selection lines of copepods collected from Kiel Canal in Germany in 2017 and 2018

Alternative Title
Date Created
2022-08-29
Location
St. Lawrence estuary, Gulf of Mexico, Great Lakes, Baltic Sea
westlimit: 10.15; southlimit: 54.3333; eastlimit: 10.15; northlimit: 54.3333
DOI
10.26008/1912/bco-dmo.878335.1
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Keywords
Epistasis
Parallel evolution
Evolve
Resequence
Abstract
This dataset represents pool-seq data from laboratory selection lines of E. affinis collected from Kiel Canal in Kiel, Germany (latitude = 54° 19' 59.88"N, longitude = 10° 9' 0"W) in 2017 (approximately 1000 copepods) and on May 30, 2018 (85 gravid females and 40 juveniles). Individual copepods (ranging from 50 to 200 in number) were pooled and their DNA was extracted. Paired-end whole-genome sequencing libraries were prepared using the Illumina Nextera DNA kit (Illumina, Inc.) and sequenced on five lanes of an Illumina HiSeq 4000 sequencer, generating an average of approximately 176 million paired-end (100 bp) reads per pool. These data have been deposited in NCBI under BioProject number PRJNA844002. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/878335
Description
Dataset: Evolve and re-sequence experiment - laboratory selection lines
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Citation
Lee, C. E., & Stern, D. B. (2022). Pool-seq data from laboratory selection lines of copepods collected from Kiel Canal in Germany in 2017 and 2018 (Version 1) [Data set]. Biological and Chemical Oceanography Data Management Office (BCO-DMO). https://doi.org/10.26008/1912/BCO-DMO.878335.1
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Except where otherwise noted, this item's license is described as Creative Commons Attribution 4.0