Moncoiffe Gwenaelle

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Moncoiffe
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Gwenaelle
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Now showing 1 - 5 of 5
  • Article
    Pilot projects for publishing and citing ocean data
    (American Geophysical Union, 2012-10-23) Urban, Edward ; Leadbetter, Adam ; Moncoiffe, Gwenaelle ; Pissierssens, Peter ; Raymond, Lisa ; Pikula, Linda
    In the ocean sciences, a project was started in 2008 to bring together scientists, data managers, and library experts to explore means to (1) increase the submission of data to data centers, (2) make data more accessible for reuse, (3) link data more closely to traditional journal publications, and (4) create a system that gives more credit to data generators. This project is a joint effort among the Scientific Committee on Oceanic Research, the International Oceanographic Data and Information Exchange (IODE) of the United Nations Educational, Scientific and Cultural Organization’s Intergovernmental Oceanographic Commission, and the Marine Biological Laboratory Woods Hole Oceanographic Institution (MBLWHOI) Library.
  • Presentation
    SCOR/IODE/MBLWHOI Library collaboration on data publication [poster] 
    ( 2011-05-25) Raymond, Lisa ; Pikula, Linda ; Lowry, Roy ; Urban, Edward ; Moncoiffe, Gwenaelle ; Pissierssens, Peter ; Norton, Cathy N.
    This poster describes the development of international standards to publish oceanographic datasets. Research areas include the assignment of persistent identifiers, tracking provenance, linking datasets to publications, attributing credit to data providers, and best practices for the physical composition and semantic description of the content.
  • Presentation
    Aligned semantics to advance data interoperability across the ocean value chain - from raw data to societal goals [poster]
    (Woods Hole Oceanographic Institution, 2019-09-16) Shepherd, Adam ; Caltagirone, Scott ; Kokkinaki, Alexandra ; Leadbetter, Adam ; Moncoiffe, Gwenaelle ; Simpson, Pauline ; Thomas, Robert ; Buttigieg, Pier Luigi
    The FAIR principles (Findability, Accessibility, Interoperability, Re-usability) have pervaded discussions on data across disciplines and sectors.While data Findability and Accessibility has greatly improved, considerable difficulties in scalable interoperation remain. Without significant progress, the rapidly growing stores of ocean data risk being siloed for many years to come. A key aspect of Interoperability is "semantic": using knowledge representation (KR) to translate human understanding into machine-readable form. Quality KR allows machines to "understand" what any information artifact is about and relate it to similar artifacts, enabling discovery and enhancing reuse. KR products are usually expressed as vocabularies, glossaries, thesauri, or ontologies (collectively, terminologies), each with its own costs and benefits. Ironically, most marine terminologies are, themselves, not truly interoperable. This is an unfortunate but inevitable outcome of localised and transient funding, and the lack of sustained global infrastructures.Nonetheless, voluntary consortia are addressing this issue with urgency to realise the promise of KR in ocean observation. Here, we present 1) the alignment of well-adopted marine terminologies, 2) a collective strategy for sustained interoperability, and 3) a use case featuring the IOC-UNESCO Ocean Best Practice System. Initialised by the Biological and Chemical Oceanography Data Management Office, we are interlinking terminologies from the Natural Environment Research Council's Vocabulary Server, the Open Biological and Biomedical Ontologies Foundry, and the Earth Science Information Partners. To serve the UNESCO Decade of Ocean Science for Sustainable Development, this effort includes ontologies which represent both the Essential Ocean Variables and the UN Sustainable Development Goals. Finally, we provide perspectives on what measures are needed to meet the interoperability challenge at scale over the next decade.
  • Article
    The GEOTRACES Intermediate Data Product 2017
    (Elsevier, 2018-06-01) Schlitzer, Reiner ; Anderson, Robert F. ; Dodas, Elena Masferrer ; Lohan, Maeve C. ; Geibert, Walter ; Tagliabue, Alessandro ; Bowie, Andrew R. ; Jeandel, Catherine ; Maldonado, Maria T. ; Landing, William M. ; Cockwell, Donna ; Abadie, Cyril ; Abouchami, Wafa ; Achterberg, Eric P. ; Agather, Alison ; Aguliar-Islas, Ana ; van Aken, Hendrik M. ; Andersen, Morten ; Archer, Corey ; Auro, Maureen E. ; Baar, Hein J. W. de ; Baars, Oliver ; Baker, Alex R. ; Bakker, Karel ; Basak, Chandranath ; Baskaran, Mark ; Bates, Nicholas R. ; Bauch, Dorothea ; van Beek, Pieter ; Behrens, Melanie K. ; Black, Erin E. ; Bluhm, Katrin ; Bopp, Laurent ; Bouman, Heather ; Bowman, Katlin ; Bown, Johann ; Boyd, Philip ; Boye, Marie ; Boyle, Edward A. ; Branellec, Pierre ; Bridgestock, Luke ; Brissebrat, Guillaume ; Browning, Thomas ; Bruland, Kenneth W. ; Brumsack, Hans-Jürgen ; Brzezinski, Mark A. ; Buck, Clifton S. ; Buck, Kristen N. ; Buesseler, Ken O. ; Bull, Abby ; Butler, Edward ; Cai, Pinghe ; Cámara Mor, Patricia ; Cardinal, Damien ; Carlson, Craig ; Carrasco, Gonzalo ; Casacuberta, Nuria ; Casciotti, Karen L. ; Castrillejo, Maxi ; Chamizo, Elena ; Chance, Rosie ; Charette, Matthew A. ; Chaves, Joaquin E. ; Cheng, Hai ; Chever, Fanny ; Christl, Marcus ; Church, Thomas M. ; Closset, Ivia ; Colman, Albert S. ; Conway, Tim M. ; Cossa, Daniel ; Croot, Peter L. ; Cullen, Jay T. ; Cutter, Gregory A. ; Daniels, Chris ; Dehairs, Frank ; Deng, Feifei ; Dieu, Huong Thi ; Duggan, Brian ; Dulaquais, Gabriel ; Dumousseaud, Cynthia ; Echegoyen-Sanz, Yolanda ; Edwards, R. Lawrence ; Ellwood, Michael J. ; Fahrbach, Eberhard ; Fitzsimmons, Jessica N. ; Flegal, A. Russell ; Fleisher, Martin Q. ; van de Flierdt, Tina ; Frank, Martin ; Friedrich, Jana ; Fripiat, Francois ; Fröllje, Henning ; Galer, Stephen J. G. ; Gamo, Toshitaka ; Ganeshram, Raja S. ; Garcia-Orellana, Jordi ; Garcia Solsona, Ester ; Gault-Ringold, Melanie ; George, Ejin ; Gerringa, Loes J. A. ; Gilbert, Melissa ; Godoy, Jose Marcus ; Goldstein, Steven L. ; Gonzalez, Santiago ; Grissom, Karen ; Hammerschmidt, Chad R. ; Hartman, Alison ; Hassler, Christel ; Hathorne, Ed C. ; Hatta, Mariko ; Hawco, Nicholas J. ; Hayes, Christopher T. ; Heimbürger, Lars-Eric ; Helgoe, Josh ; Heller, Maija Iris ; Henderson, Gideon M. ; Henderson, Paul B. ; van Heuven, Steven ; Ho, Peng ; Horner, Tristan J. ; Hsieh, Yu-Te ; Huang, Kuo-Fang ; Humphreys, Matthew P. ; Isshiki, Kenji ; Jacquot, Jeremy E. ; Janssen, David J. ; Jenkins, William J. ; John, Seth ; Jones, Elizabeth M. ; Jones, Janice L. ; Kadko, David ; Kayser, Rick ; Kenna, Timothy C. ; Khondoker, Roulin ; Kim, Taejin ; Kipp, Lauren ; Klar, Jessica K. ; Klunder, Maarten ; Kretschmer, Sven ; Kumamoto, Yuichiro ; Laan, Patrick ; Labatut, Marie ; Lacan, Francois ; Lam, Phoebe J. ; Lambelet, Myriam ; Lamborg, Carl H. ; le Moigne, Frederique ; Le Roy, Emilie ; Lechtenfeld, Oliver J. ; Lee, Jong-Mi ; Lherminier, Pascale ; Little, Susan ; López-Lora, Mercedes ; Lu, Yanbin ; Masque, Pere ; Mawji, Edward ; McClain, Charles R. ; Measures, Christopher I. ; Mehic, Sanjin ; Menzel Barraqueta, Jan-Lukas ; Merwe, Pier van der ; Middag, Rob ; Mieruch, Sebastian ; Milne, Angela ; Minami, Tomoharu ; Moffett, James W. ; Moncoiffe, Gwenaelle ; Moore, Willard S. ; Morris, Paul J. ; Morton, Peter L. ; Nakaguchi, Yuzuru ; Nakayama, Noriko ; Niedermiller, John ; Nishioka, Jun ; Nishiuchi, Akira ; Noble, Abigail E. ; Obata, Hajime ; Ober, Sven ; Ohnemus, Daniel C. ; van Ooijen, Jan ; O'Sullivan, Jeanette ; Owens, Stephanie A. ; Pahnke, Katharina ; Paul, Maxence ; Pavia, Frank ; Pena, Leopoldo D. ; Peters, Brian ; Planchon, Frederic ; Planquette, Helene ; Pradoux, Catherine ; Puigcorbé, Viena ; Quay, Paul D. ; Queroue, Fabien ; Radic, Amandine ; Rauschenberg, Sara ; Rehkämper, Mark ; Rember, Robert ; Remenyi, Tomas A. ; Resing, Joseph A. ; Rickli, Joerg ; Rigaud, Sylvain ; Rijkenberg, Micha J. A. ; Rintoul, Stephen R. ; Robinson, Laura F. ; Roca-Martí, Montserrat ; Rodellas, Valenti ; Roeske, Tobias ; Rolison, John M. ; Rosenberg, Mark ; Roshan, Saeed ; Rutgers van der Loeff, Michiel M. ; Ryabenko, Evgenia ; Saito, Mak A. ; Salt, Lesley ; Sanial, Virginie ; Sarthou, Geraldine ; Schallenberg, Christina ; Schauer, Ursula ; Scher, Howie ; Schlosser, Christian ; Schnetger, Bernhard ; Scott, Peter M. ; Sedwick, Peter N. ; Semiletov, Igor P. ; Shelley, Rachel U. ; Sherrell, Robert M. ; Shiller, Alan M. ; Sigman, Daniel M. ; Singh, Sunil Kumar ; Slagter, Hans ; Slater, Emma ; Smethie, William M. ; Snaith, Helen ; Sohrin, Yoshiki ; Sohst, Bettina M. ; Sonke, Jeroen E. ; Speich, Sabrina ; Steinfeldt, Reiner ; Stewart, Gillian ; Stichel, Torben ; Stirling, Claudine H. ; Stutsman, Johnny ; Swarr, Gretchen J. ; Swift, James H. ; Thomas, Alexander ; Thorne, Kay ; Till, Claire P. ; Till, Ralph ; Townsend, Ashley T. ; Townsend, Emily ; Tuerena, Robyn ; Twining, Benjamin S. ; Vance, Derek ; Velazquez, Sue ; Venchiarutti, Celia ; Villa-Alfageme, Maria ; Vivancos, Sebastian M. ; Voelker, Antje H. L. ; Wake, Bronwyn ; Warner, Mark J. ; Watson, Ros ; van Weerlee, Evaline ; Weigand, M. Alexandra ; Weinstein, Yishai ; Weiss, Dominik ; Wisotzki, Andreas ; Woodward, E. Malcolm S. ; Wu, Jingfeng ; Wu, Yingzhe ; Wuttig, Kathrin ; Wyatt, Neil ; Xiang, Yang ; Xie, Ruifang C. ; Xue, Zichen ; Yoshikawa, Hisayuki ; Zhang, Jing ; Zhang, Pu ; Zhao, Ye ; Zheng, Linjie ; Zheng, Xin-Yuan ; Zieringer, Moritz ; Zimmer, Louise A. ; Ziveri, Patrizia ; Zunino, Patricia ; Zurbrick, Cheryl
    The GEOTRACES Intermediate Data Product 2017 (IDP2017) is the second publicly available data product of the international GEOTRACES programme, and contains data measured and quality controlled before the end of 2016. The IDP2017 includes data from the Atlantic, Pacific, Arctic, Southern and Indian oceans, with about twice the data volume of the previous IDP2014. For the first time, the IDP2017 contains data for a large suite of biogeochemical parameters as well as aerosol and rain data characterising atmospheric trace element and isotope (TEI) sources. The TEI data in the IDP2017 are quality controlled by careful assessment of intercalibration results and multi-laboratory data comparisons at crossover stations. The IDP2017 consists of two parts: (1) a compilation of digital data for more than 450 TEIs as well as standard hydrographic parameters, and (2) the eGEOTRACES Electronic Atlas providing an on-line atlas that includes more than 590 section plots and 130 animated 3D scenes. The digital data are provided in several formats, including ASCII, Excel spreadsheet, netCDF, and Ocean Data View collection. Users can download the full data packages or make their own custom selections with a new on-line data extraction service. In addition to the actual data values, the IDP2017 also contains data quality flags and 1-σ data error values where available. Quality flags and error values are useful for data filtering and for statistical analysis. Metadata about data originators, analytical methods and original publications related to the data are linked in an easily accessible way. The eGEOTRACES Electronic Atlas is the visual representation of the IDP2017 as section plots and rotating 3D scenes. The basin-wide 3D scenes combine data from many cruises and provide quick overviews of large-scale tracer distributions. These 3D scenes provide geographical and bathymetric context that is crucial for the interpretation and assessment of tracer plumes near ocean margins or along ridges. The IDP2017 is the result of a truly international effort involving 326 researchers from 25 countries. This publication provides the critical reference for unpublished data, as well as for studies that make use of a large cross-section of data from the IDP2017. This article is part of a special issue entitled: Conway GEOTRACES - edited by Tim M. Conway, Tristan Horner, Yves Plancherel, and Aridane G. González.
  • Article
    Toward a new data standard for combined marine biological and environmental datasets - expanding OBIS beyond species occurrences
    (Pensoft, 2017-01-09) De Pooter, Daphnis ; Appeltans, Ward ; Bailly, Nicolas ; Bristol, Sky ; Deneudt, Klaas ; Eliezer, Menashè ; Fujioka, Ei ; Giorgetti, Alessandra ; Goldstein, Philip ; Lewis, Mirtha ; Lipizer, Marina ; Mackay, Kevin ; Marin, Maria ; Moncoiffe, Gwenaelle ; Nikolopoulou, Stamatina ; Provoost, Pieter ; Rauch, Shannon ; Roubicek, Andres ; Torres, Carlos ; van de Putte, Anton ; Vandepitte, Leen ; Vanhoorne, Bart ; Vinci, Matteo ; Wambiji, Nina ; Watts, David ; Salas, Eduardo Klein ; Hernandez, Francisco
    The Ocean Biogeographic Information System (OBIS) is the world’s most comprehensive online, open-access database of marine species distributions. OBIS grows with millions of new species observations every year. Contributions come from a network of hundreds of institutions, projects and individuals with common goals: to build a scientific knowledge base that is open to the public for scientific discovery and exploration and to detect trends and changes that inform society as essential elements in conservation management and sustainable development. Until now, OBIS has focused solely on the collection of biogeographic data (the presence of marine species in space and time) and operated with optimized data flows, quality control procedures and data standards specifically targeted to these data. Based on requirements from the growing OBIS community to manage datasets that combine biological, physical and chemical measurements, the OBIS-ENV-DATA pilot project was launched to develop a proposed standard and guidelines to make sure these combined datasets can stay together and are not, as is often the case, split and sent to different repositories. The proposal in this paper allows for the management of sampling methodology, animal tracking and telemetry data, biological measurements (e.g., body length, percent live cover, ...) as well as environmental measurements such as nutrient concentrations, sediment characteristics or other abiotic parameters measured during sampling to characterize the environment from which biogeographic data was collected. The recommended practice builds on the Darwin Core Archive (DwC-A) standard and on practices adopted by the Global Biodiversity Information Facility (GBIF). It consists of a DwC Event Core in combination with a DwC Occurrence Extension and a proposed enhancement to the DwC MeasurementOrFact Extension. This new structure enables the linkage of measurements or facts - quantitative and qualitative properties - to both sampling events and species occurrences, and includes additional fields for property standardization. We also embrace the use of the new parentEventID DwC term, which enables the creation of a sampling event hierarchy. We believe that the adoption of this recommended practice as a new data standard for managing and sharing biological and associated environmental datasets by IODE and the wider international scientific community would be key to improving the effectiveness of the knowledge base, and will enhance integration and management of critical data needed to understand ecological and biological processes in the ocean, and on land.