Marine Chemistry and Geochemistry (MC&G)
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Research in MC&G ranges from the glacial history of the Antarctic ice sheet and the formation of surface films in the upper micron of the ocean to the cycling of carbon through various ocean reservoirs, the history of ocean circulation recorded in the growth bands of coral, and the role of hydrothermal vents and seawater-rock interactions on the composition of the oceans.
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ArticleAn assessment of CO2 uptake in the Arctic Ocean from 1985 to 2018(American Geophysical Union, 2023-11-10)As a contribution to the Regional Carbon Cycle Assessment and Processes phase 2 (RECCAP2) project, we present synthesized estimates of Arctic Ocean sea-air CO2 fluxes and their uncertainties from surface ocean pCO2-observation products, ocean biogeochemical hindcast and data assimilation models, and atmospheric inversions. For the period of 1985–2018, the Arctic Ocean was a net sink of CO2 of 116 ± 4 TgC yr−1 in the pCO2 products, 92 ± 30 TgC yr−1 in the models, and 91 ± 21 TgC yr−1 in the atmospheric inversions. The CO2 uptake peaks in late summer and early autumn, and is low in winter when sea ice inhibits sea-air fluxes. The long-term mean CO2 uptake in the Arctic Ocean is primarily caused by steady-state fluxes of natural carbon (70% ± 15%), and enhanced by the atmospheric CO2 increase (19% ± 5%) and climate change (11% ± 18%). The annual mean CO2 uptake increased from 1985 to 2018 at a rate of 31 ± 13 TgC yr−1 dec−1 in the pCO2 products, 10 ± 4 TgC yr−1 dec−1 in the models, and 32 ± 16 TgC yr−1 dec−1 in the atmospheric inversions. Moreover, 77% ± 38% of the trend in the net CO2 uptake over time is caused by climate change, primarily due to rapid sea ice loss in recent years. Furthermore, true uncertainties may be larger than the given ensemble standard deviations due to common structural biases across all individual estimates.
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ArticleCorals and sponges are hotspots of reactive oxygen species in the deep sea(National Academy of Sciences, 2023-11-15)Reactive oxygen species (ROS) are central to diverse biological processes through which organisms respond to and interact with their surroundings. Yet, a lack of direct measurements limits our understanding of the distribution of ROS in the ocean. Using a recently developed in situ sensor, we show that deep-sea corals and sponges produce the ROS superoxide, revealing that benthic organisms can be sources and hotspots of ROS production in these environments. These findings confirm previous contentions that extracellular superoxide production by corals can be independent of the activity of photosynthetic symbionts. The discovery of deep-sea corals and sponges as sources of ROS has implications for the physiology and ecology of benthic organisms and introduces a previously overlooked suite of redox reactants at depth.
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ArticleIodine-to-calcium ratios in deep-sea scleractinian and bamboo corals(Frontiers Media, 2023-11-06)The distribution of dissolved iodine in seawater is sensitive to multiple biogeochemical cycles, including those of nitrogen and oxygen. The iodine-to-calcium ratio (I/Ca) of marine carbonates, such as bulk carbonate or foraminifera, has emerged as a potential proxy for changes in past seawater oxygenation. However, the utility of the I/Ca proxy in deep-sea corals, natural archives of seawater chemistry with wide spatial coverage and radiometric dating potential, remains unexplored. Here, we present the first I/Ca data obtained from modern deep-sea corals, specifically scleractinian and bamboo corals, collected from the Atlantic, Eastern Pacific, and Southern Oceans, encompassing a wide range of seawater oxygen concentrations (10–280 μmol/kg). In contrast to thermodynamic predictions, we observe higher I/Ca ratios in aragonitic corals (scleractinian) compared to calcitic corals (bamboo). This observation suggests a strong biological control during iodate incorporation into deep-sea coral skeletons. For the majority of scleractinian corals, I/Ca exhibits a covariation with local seawater iodate concentrations, which is closely related to seawater oxygen content. Scleractinian corals also exhibit notably lower I/Ca below a seawater oxygen threshold of approximately 160 μmol/kg. In contrast, no significant differences in I/Ca are found among bamboo corals across the range of oxygen concentrations encountered (15–240 μmol/kg). In the North Atlantic, several hydrographic factors, such as temperature and/or salinity, may additionally affect coral I/Ca. Our results highlight the potential of I/Ca ratios in deep-sea scleractinian corals to serve as an indicator of past seawater iodate concentrations, providing valuable insights into historical seawater oxygen levels.
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ArticleDistinct microbial communities degrade cellulose diacetate bioplastics in the coastal ocean(American Society for Microbiology, 2023-12-06)Cellulose diacetate (CDA) is a bio-based plastic widely used in consumer products. CDA is a promising alternative to conventional thermoplastics due to its susceptibility to biodegradation in various environments. Despite widespread evidence for the degradation of CDA, relatively little is known about the microorganisms that drive degradation, particularly in the ocean. Recently, we documented the biodegradation of CDA-based materials (i.e., fabric, film, and foam) in a continuous-flow natural seawater mesocosm on the timescales of months, as indicated by mass loss, enzyme activity, and respiration to carbon dioxide. These findings paved the way for the present study aimed at identifying key microbial taxa implicated in CDA degradation. Analysis based on 16S rRNA gene amplicon sequencing of bacteria and archaea revealed that material type, incubation time, material morphology (e.g., fabric vs film), and plasticizer content significantly influenced the microbial community structure. Differential abundance analysis revealed that bacterial taxa affiliated with the families of Arenicellaceae, Cellvibrionaceae, Methyloligellaceae, Micavibrionaceae, Puniceicoccaceae, Spirosomaceae, and Thermoanaerobaculaceae, and the order of Pseudomonadales potentially initiated the degradation (i.e., deacetylation) of CDA fabric and film. These taxa were notably distinct from CDA-degrading microbes reported in non-seawater environments. Collectively, the findings lend further support for CDA as a promising next-generation, high-utility, and low-environmental persistence bioplastic material.
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ArticleNatural analogs to ocean alkalinity enhancement(Copernicus Publications, 2023-11-27)Ocean alkalinity enhancement (OAE) research can be supplemented by studying the natural alkalinity cycle. In this chapter, we introduce the concept of natural analogs to ocean alkalinity enhancement. We describe Earth system processes relevant to OAE deployment and its measurement, reporting, and verification. We then describe some suitable natural analog locations that could serve as study sites to understand how these processes may interact with OAE. Approaches to examining the geological record are also considered. Practical considerations for establishing a natural analog study are discussed, including geochemical mass balance, choosing a site, establishing a control, choosing a measurement suite and platform, and coordinating with ocean models. We identify rivers and their plumes, glacial fjords, whiting events, and basinal seas with elevated alkalinity as promising candidates for initial natural analog studies. This chapter is not meant to be prescriptive but instead is written to inspire researchers to creatively explore the power of natural analogs to advance our understanding of OAE. Key recommendations include considering appropriate spatial and temporal scales of the study and associated measurement criteria and designing the study with applicable outcomes to OAE research, including implications for deployment and/or monitoring.
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ArticleTrace element geochemistry in North Pacific red clay sediment porewaters and implications for water‐column studies(American Geophysical Union, 2023-11-14)Geochemical analyses of trace elements in the ocean water column have suggested that pelagic clay-rich sediments are a major source of various elements to bottom-waters. However, corresponding high-quality measurements of trace element concentrations in porewaters of pelagic clay-rich sediments are scarce, making it difficult to evaluate the contributions from benthic processes to global oceanic cycles of trace elements. To bridge this gap, we analyzed porewater and bulk sediment concentrations of vanadium, chromium, cobalt, nickel, copper, arsenic, molybdenum, barium and uranium, as well as concentrations of the major oxidants nitrate, manganese, iron, and sulfate in the top 30 cm of cores collected along a transect from Hawaii to Alaska. The data show large increases in porewater concentrations of vanadium, manganese, cobalt, nickel, copper, and arsenic within the top cm of the sediment, consistent with the release of these elements from remineralized organic matter. The sediments are a sink for sulfate, uranium, and molybdenum, even though conditions within the sampled top 30 cm remain aerobic. Porewater chromium concentrations generally increase with depth due to release from sediment particles. Extrapolated to the global aerial extent of pelagic clay sediment, the benthic fluxes in mol yr−1 are Ba 3.9 ± 3.6 × 109, Mn 3.4 ± 3.5 × 108, Co 2.6 ± 1.3 × 107, Ni 9.6 ± 8.6 × 108, Cu 4.6 ± 2.4 × 109, Cr 1.7 ± 1.1 × 108, As 6.1 ± 7.0 × 108, V 6.0 ± 2.5 × 109. With the exception of vanadium, calculated fluxes across the sediment–water interface are consistent with the variability in bottom-water concentrations and ocean residence time of the studied elements.
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ArticleClumped and conventional isotopes of natural gas reveal basin burial, denudation, and biodegradation history(Geochemical Society, 2023-10-13)Formation and post-genetic alteration of hydrocarbons provide insights into the dynamic and complex geologic, hydrologic, and microbial history of shallow crustal environments. Clumped isotopologues of methane (e.g., Δ13CH3D) have emerged as a proxy for constraining methane formation temperatures in sedimentary basins. However, unrealistically high apparent temperatures and microbial cycling of methane necessitate further investigation into how the generation and biodegradation of hydrocarbons may modify methane clumped isotopologue signatures. This study analyzed and modeled the clumped isotopologues of methane, in addition to traditional gas isotopes, to provide new insights into the origin, thermal maturity, migration, and biodegradation histories of hydrocarbons in the Paradox Basin in the Colorado Plateau. The basin was deeply buried in the geologic past and has been recently incised, leading to rapid denudation, enhanced meteoric circulation, and microbial activity. δ13CCH4 and CH4/ΣC2+ ratios suggest that most natural gases in various reservoirs throughout the basin are thermogenic in origin with variable thermal maturities. However, signatures suggestive of anaerobic oxidation of ethane and propane, and secondary microbial methane generation, exist. In the northeastern part of the basin, Δ13CH3D values in reservoirs above and below the Paradox Formation source rocks are consistent with thermodynamic equilibrium, indicating that the thermally mature hydrocarbons equilibrated at ≥160 °C during maximum burial over 30–80 Ma. Disequilibrium Δ13CH3D values of natural gas in Paradox Formation reservoirs along the southwestern margin of the basin suggest the presence of low-maturity hydrocarbons consistent with the region’s shallower burial history. Models of Δ13CH3D values based on the exchange rate of hydrogen isotopes between methane and water and the basin thermal history support that meteoric recharge and microbial activity, following incision/denudation over the past few million years, promoted anaerobic oxidation of hydrocarbons (particularly ethane and propane), biodegradation of crude oil, and generation of secondary microbial methane in shallow reservoirs.
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ArticleAsh deposition triggers phytoplankton blooms at Nishinoshima Volcano, Japan(American Geophysical Union, 2023-10-26)Volcanoes that deposit eruptive products into the ocean can trigger phytoplankton blooms near the deposition area. Phytoplankton blooms impact the global carbon cycle, but the specific conditions and mechanisms that facilitate volcanically triggered blooms are not well understood, especially in low nutrient ocean regions. We use satellite remote sensing to analyze the chlorophyll response to an 8-month period of explosive and effusive activity from Nishinoshima volcano, Japan. Nishinoshima is an ocean island volcano in a low nutrient low chlorophyll region of the Northern Pacific Ocean. From June to August 2020, during explosive activity, satellite-derived chlorophyll-a was detectable with amplitudes significantly above the long-term climatological value. After the explosive activity ceased in mid-August 2020, these areas of heightened chlorophyll concentration decreased as well. In addition, we used aerial observations and satellite imagery to demonstrate a spatial correlation between blooms and ash plume direction. Using a sun-induced chlorophyll-a fluorescence satellite product, we confirmed that the observed chlorophyll blooms are phytoplankton blooms. Based on an understanding of the nutrients needed to supply blooms, we hypothesize that blooms of nitrogen-fixing phytoplankton led to a 1010–1012 g drawdown of carbon. Thus, the bloom could have significantly mediated the output of carbon from the explosive phase of the eruption but is a small fraction of anthropogenic CO2 stored in the ocean or the global biological pump. Overall, we provide a case study of fertilization of a nutrient-poor ocean with volcanic ash and demonstrate a scenario where multi-month scale deposition triggers continuous phytoplankton blooms across 1,000s of km2.
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ArticleData reporting and sharing for ocean alkalinity enhancement research(Copernicus Publications, 2023-11-27)Effective management of data is essential for successful ocean alkalinity enhancement (OAE) research, as it guarantees the long-term preservation, interoperability, discoverability, and accessibility of data. OAE research generates various types of data, such as discrete bottle measurements, autonomous measurements from surface underway and uncrewed platforms (e.g., moorings, Saildrones, gliders, Argo floats), physiological response studies (e.g., laboratory, mesocosm, and field experiments, and natural analogues), and model outputs. This paper addresses data and metadata standards for all these types of OAE data. As part of this study, existing data standards have been updated to accommodate OAE research needs, and a completely new physiological response data standard has been introduced. Additionally, an existing ocean acidification metadata template has been upgraded to be applicable to OAE research. This paper also presents controlled vocabularies for OAE research, including types of OAE studies, source materials for alkalinization, platforms, and instruments. These guidelines will aid OAE researchers in preparing their metadata and data for submission to permanent archives. Finally, the paper provides information about available data assembly centers that OAE researchers can utilize for their data needs. The guidelines outlined in this paper are applicable to ocean acidification research as well.
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ArticleThe Southern Ocean Carbon Cycle 1985–2018: Mean, Seasonal Cycle, Trends, and Storage(American Geophysical Union, 2023-11-10)We assess the Southern Ocean CO2 uptake (1985–2018) using data sets gathered in the REgional Carbon Cycle Assessment and Processes Project Phase 2. The Southern Ocean acted as a sink for CO2 with close agreement between simulation results from global ocean biogeochemistry models (GOBMs, 0.75 ± 0.28 PgC yr−1) and pCO2-observation-based products (0.73 ± 0.07 PgC yr−1). This sink is only half that reported by RECCAP1 for the same region and timeframe. The present-day net uptake is to first order a response to rising atmospheric CO2, driving large amounts of anthropogenic CO2 (Cant) into the ocean, thereby overcompensating the loss of natural CO2 to the atmosphere. An apparent knowledge gap is the increase of the sink since 2000, with pCO2-products suggesting a growth that is more than twice as strong and uncertain as that of GOBMs (0.26 ± 0.06 and 0.11 ± 0.03 Pg C yr−1 decade−1, respectively). This is despite nearly identical pCO2 trends in GOBMs and pCO2-products when both products are compared only at the locations where pCO2 was measured. Seasonal analyses revealed agreement in driving processes in winter with uncertainty in the magnitude of outgassing, whereas discrepancies are more fundamental in summer, when GOBMs exhibit difficulties in simulating the effects of the non-thermal processes of biology and mixing/circulation. Ocean interior accumulation of Cant points to an underestimate of Cant uptake and storage in GOBMs. Future work needs to link surface fluxes and interior ocean transport, build long overdue systematic observation networks and push toward better process understanding of drivers of the carbon cycle.
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ArticleGlacial meltwater in the current system of Southern Greenland(American Geophysical Union, 2023-12-04)The Greenland Ice Sheet is losing mass at an accelerating pace, increasing its contribution to the freshwater input into the Nordic Seas and the subpolar North Atlantic. It has been proposed that this increased freshwater may impact the Atlantic Meridional Overturning Circulation by affecting the stratification of the convective regions of the North Atlantic and Nordic Seas. Observations of the transformation and pathways of meltwater from the Greenland Ice Sheet on the continental shelf and in the gyre interior, however, are lacking. Here, we report on noble gas derived observations of submarine meltwater distribution and transports in the East and West Greenland Current Systems of southern Greenland and around Cape Farewell. In southeast Greenland, submarine meltwater is concentrated in the East Greenland Coastal Current core with maximum concentrations of 0.8%, thus significantly diluted relative to fjord observations. It is found in water with density ranges from 1,024 to 1027.2 kg m−3 and salinity from 30.6 to 34, which extends as deep as 250 m and as far offshore as 60 km on the Greenland shelf. Submarine meltwater transport on the shelf averages 5.0 ± 1.6 mSv which, if representative of the mean annual transport, represents 60%–80% of the total solid ice discharge from East Greenland and suggests relatively little offshore export of meltwater east and upstream of Cape Farewell. The location of the meltwater transport maximum shifts toward the shelfbreak around Cape Farewell, positioning the meltwater for offshore flux in regions of known cross-shelf exchange along the West Greenland coast.
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ArticleEukaryotic genomes from a global metagenomic data set illuminate trophic modes and biogeography of ocean plankton(American Society for Microbiology, 2023-11-10)Metagenomics is a powerful method for interpreting the ecological roles and physiological capabilities of mixed microbial communities. Yet, many tools for processing metagenomic data are neither designed to consider eukaryotes nor are they built for an increasing amount of sequence data. EukHeist is an automated pipeline to retrieve eukaryotic and prokaryotic metagenome-assembled genomes (MAGs) from large-scale metagenomic sequence data sets. We developed the EukHeist workflow to specifically process large amounts of both metagenomic and/or metatranscriptomic sequence data in an automated and reproducible fashion. Here, we applied EukHeist to the large-size fraction data (0.8–2,000 µm) from Tara Oceans to recover both eukaryotic and prokaryotic MAGs, which we refer to as TOPAZ (Tara Oceans Particle-Associated MAGs). The TOPAZ MAGs consisted of >900 environmentally relevant eukaryotic MAGs and >4,000 bacterial and archaeal MAGs. The bacterial and archaeal TOPAZ MAGs expand upon the phylogenetic diversity of likely particle- and host-associated taxa. We use these MAGs to demonstrate an approach to infer the putative trophic mode of the recovered eukaryotic MAGs. We also identify ecological cohorts of co-occurring MAGs, which are driven by specific environmental factors and putative host-microbe associations. These data together add to a number of growing resources of environmentally relevant eukaryotic genomic information. Complementary and expanded databases of MAGs, such as those provided through scalable pipelines like EukHeist, stand to advance our understanding of eukaryotic diversity through increased coverage of genomic representatives across the tree of life.
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ArticleUp in smoke: most aerosolized Fe from biomass burning does not derive from foliage(American Geophysical Union, 2023-08-25)Iron (Fe) is a limiting micronutrient in many marine ecosystems. The lack of sufficient Fe can stunt marine productivity and limit carbon sequestration from the atmosphere to the ocean. Recent studies suggest that biomass burning represents an important Fe source to the marine environment because pyrogenic particles have enhanced solubility after atmospheric processing. We examined foliage representative of four distinct biomes subject to frequent burning events, including boreal/temporal forests, humid tropical, arid tropical, and grassland. We burned these samples in the absence of soil to isolate the Fe from the fine particle (PM2.5) fraction that is derived directly from the burning foliage. We find that <1.5% of the Fe in plant matter is aerosolized throughout the burn in the fine fraction. We estimate that between 2% and 9% of the Fe released from biomass burning can be attributed to the fine fraction of the foliage itself, and <50% from the foliage overall. Most of the Fe aerosolized during biomass burning is accounted for by soil-suspended particles.
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ArticleCOBRA Master Class: Providing deep-sea expedition leadership training to accelerate early career advancement(Frontiers Media, 2023-10-05)Leading deep-sea research expeditions requires a breadth of training and experience, and the opportunities for Early Career Researchers (ECRs) to obtain focused mentorship on expedition leadership are scarce. To address the need for leadership training in deep-sea expeditionary science, the Crustal Ocean Biosphere Research Accelerator (COBRA) launched a 14-week virtual Master Class with both synchronous and asynchronous components to empower students with the skills and tools to successfully design, propose, and execute deep-sea oceanographic field research. The Master Class offered customized and distributed training approaches and created an open-access syllabus with resources, including reading material, lectures, and on-line resources freely-available on the Master Class website (cobra.pubpub.org). All students were Early Career Researchers (ECRs, defined here as advanced graduate students, postdoctoral scientists, early career faculty, or individuals with substantial industry, government, or NGO experience) and designated throughout as COBRA Fellows. Fellows engaged in topics related to choosing the appropriate deep-sea research asset for their Capstone “dream cruise” project, learning about funding sources and how to tailor proposals to meet those source requirements, and working through an essential checklist of pre-expedition planning and operations. The Master Class covered leading an expedition at sea, at-sea operations, and ship-board etiquette, and the strengths and challenges of telepresence. It also included post-expedition training on data management strategies and report preparation and outputs. Throughout the Master Class, Fellows also discussed education and outreach, international ocean law and policy, and the importance and challenges of team science. Fellows further learned about how to develop concepts respectfully with regard to geographic and cultural considerations of their intended study sites. An assessment of initial outcomes from the first iteration of the COBRA Master Class reinforces the need for such training and shows great promise with one-quarter of the Fellows having submitted a research proposal to national funding agencies within six months of the end of the class. As deep-sea research continues to accelerate in scope and speed, providing equitable access to expedition training is a top priority to enable the next generation of deep-sea science leadership.
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ArticleEvaluation of new and net community production estimates by multiple ship-based and autonomous observations in the Northeast Pacific Ocean(University of California Press, 2023-06-16)New production (NP) and net community production (NCP) measurements are often used as estimates of carbon export potential from the mixed layer of the ocean, an important process in the regulation of global climate. Diverse methods can be used to measure NP and NCP, from research vessels, autonomous platforms, and remote sensing, each with its own set of benefits and uncertainties. The various methods are rarely applied simultaneously in a single location, limiting our ability for direct comparisons of the resulting measurements. In this study, we evaluated NP and NCP from thirteen independent datasets collected via in situ, in vitro, and satellite-based methods near Ocean Station Papa during the 2018 Northeast Pacific field campaign of the NASA project EXport Processes in the Ocean from RemoTe Sensing (EXPORTS). Altogether, the datasets indicate that carbon export potential was relatively low (median daily averages between −5.1 and 12.6 mmol C m−2 d−1), with most measurements indicating slight net autotrophy in the region. This result is consistent with NCP estimates based on satellite measurements of sea surface temperature and chlorophyll a. We explored possible causes of discrepancies among methods, including differences in assumptions about stoichiometry, vertical integration, total volume sampled, and the spatiotemporal extent considered. Results of a generalized additive mixed model indicate that the spatial variation across platforms can explain much of the difference among methods. Once spatial variation and temporal autocorrelation are considered, a variety of methods can provide consistent estimates of NP and NCP, leveraging the strengths of each approach.
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ArticleBarium in seawater: dissolved distribution, relationship to silicon, and barite saturation state determined using machine learning(Copernicus Publications, 2023-09-13)Barium is widely used as a proxy for dissolved silicon and particulate organic carbon fluxes in seawater. However, these proxy applications are limited by insufficient knowledge of the dissolved distribution of Ba ([Ba]). For example, there is significant spatial variability in the barium–silicon relationship, and ocean chemistry may influence sedimentary Ba preservation. To help address these issues, we developed 4095 models for predicting [Ba] using Gaussian process regression machine learning. These models were trained to predict [Ba] from standard oceanographic observations using GEOTRACES data from the Arctic, Atlantic, Pacific, and Southern oceans. Trained models were then validated by comparing predictions against withheld [Ba] data from the Indian Ocean. We find that a model trained using depth, temperature, and salinity, as well as dissolved dioxygen, phosphate, nitrate, and silicate, can accurately predict [Ba] in the Indian Ocean with a mean absolute percentage deviation of 6.0 %. We use this model to simulate [Ba] on a global basis using these same seven predictors in the World Ocean Atlas. The resulting [Ba] distribution constrains the Ba budget of the ocean to 122(±7) × 1012 mol and reveals oceanographically consistent variability in the barium–silicon relationship. We then calculate the saturation state of seawater with respect to barite. This calculation reveals systematic spatial and vertical variations in marine barite saturation and shows that the ocean below 1000 m is at equilibrium with respect to barite. We describe a number of possible applications for our model outputs, ranging from use in mechanistic biogeochemical models to paleoproxy calibration. Our approach demonstrates the utility of machine learning in accurately simulating the distributions of tracers in the sea and provides a framework that could be extended to other trace elements. Our model, the data used in training and validation, and global outputs are available in Horner and Mete (2023, https://doi.org/10.26008/1912/bco-dmo.885506.2).
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ArticlePredicting carbonate chemistry on the Northwest Atlantic Shelf using neural networks(American Geophysical Union, 2023-06-28)The Northwest Atlantic Shelf (NAS) region has experienced accelerated warming, heatwaves, and is susceptible to ocean acidification, yet also suffers from a paucity of carbonate chemistry observations, particularly at depth. We address this critical data gap by developing three different neural network models to predict dissolved inorganic carbon (DIC) and total alkalinity (TA) in the NAS region from more readily available hydrographic and satellite data. The models predicted DIC with r2 between 0.913–0.963 and root mean square errors (RMSE) between 15.4–23.7 (μmol kg−1) and TA with r2 between 0.986–0.983 and RMSE between 9.0–10.4 (μmol kg−1) on an unseen test data set that was not used in training the models. Cross-validation analysis revealed that all models were insensitive to the choice of training data and had good generalization performance on unseen data. Uncertainty in DIC and TA were low (coefficients of variation 0.1%–1%). Compared with other predictive models of carbonate system variables in this region, a larger and more diverse data set with full seasonal coverage and a more sophisticated model architecture resulted in a robust predictive model with higher accuracy and precision across all seasons. We used one of the models to generate a reconstructed seasonal distribution of carbonate chemistry fields based on DIC and TA predictions that shows a clear seasonal progression and large spatial gradients consistent with observations. The distinct models will allow for a range of applications based on the predictor variables available and will be useful to understand and address ocean sustainability challenges.
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ArticleMetabolite diversity among representatives of divergent Prochlorococcus ecotypes(American Society for Microbiology, 2023-10-10)The euphotic zone of the surface ocean contains distinct physical-chemical regimes that vary in light and nutrient concentrations as an inverse function of depth. The most numerous phytoplankter of the mid- and low-latitude ocean is the picocyanobacterium Prochlorococcus, which consists of ecologically distinct subpopulations (i.e., “ecotypes”). Ecotypes have different temperature, light, and nutrient optima and display distinct relative abundances along gradients of these niche dimensions. As a primary producer, Prochlorococcus fixes and releases organic carbon to neighboring microbes as part of the microbial loop. However, little is known about the specific molecules Prochlorococcus accumulates and releases or how these processes vary among its ecotypes. Here, we characterize the metabolite diversity of Prochlorococcus by profiling three ecologically distinct cultured strains: MIT9301, representing a high-light-adapted ecotype dominating shallow tropical and sub-tropical waters; MIT0801, representing a low-light-adapted ecotype found throughout the euphotic zone; and MIT9313, representing a low-light-adapted ecotype relatively most abundant at the base of the euphotic zone. In both intracellular and extracellular metabolite profiles, we observe striking differences across strains in the accumulation and release of molecules, such as the DNA methylating agent S-adenosyl-methionine (intracellular) and the branched-chain amino acids (intracellular) and their precursors (extracellular). While some differences reflect variable genome content across the strains, others likely reflect variable regulation of conserved pathways. In the extracellular profiles, we identify molecules such as pantothenic acid and aromatic amino acids that may serve as currencies in Prochlorococcus’ interactions with neighboring microbes and, therefore, merit further investigation.
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ArticleSpatial extent of dysbiosis in the branching coral Pocillopora damicornis during an acute disease outbreak(Nature Research, 2023-10-02)Globally, coral reefs face increasing disease prevalence and large-scale outbreak events. These outbreaks offer insights into microbial and functional patterns of coral disease, including early indicators of disease that may be present in visually-healthy tissues. Outbreak events also allow investigation of how reef-building corals, typically colonial organisms, respond to disease. We studied Pocillopora damicornis during an acute tissue loss disease outbreak on Guam to determine whether dysbiosis was present in visually-healthy tissues ahead of advancing disease lesions. These data reveal that coral fragments with visual evidence of disease are expectedly dysbiotic with high microbial and metabolomic variability. However, visually-healthy tissues from the same colonies lacked dysbiosis, suggesting disease containment near the affected area. These results challenge the idea of using broad dysbiosis as a pre-visual disease indicator and prompt reevaluation of disease assessment in colonial organisms such as reef-building corals.
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ArticleMulti-molecular 14C evidence for mineral control on terrestrial carbon storage and export(The Royal Society, 2023-10-09)Compound- and compound class-specific radiocarbon analysis of source-diagnostic ‘biomarker’ molecules has emerged as a powerful tool to gain insights into terrestrial carbon cycling. While most studies thus far have focused on higher plant biomarkers (i.e. plant leaf-wax n-alkanoic acids and n-alkanes, lignin-derived phenols), tracing paedogenic carbon is crucial given the pivotal role of soils in modulating ecosystem carbon turnover and organic carbon (OC) export. Here, we determine the radiocarbon (14C) ages of glycerol dialkyl glycerol tetraethers (GDGTs) in riverine sediments and compare them to those of higher plant biomarkers as well as markers of pyrogenic (fire-derived) carbon (benzene polycarboxylic acids, BPCAs) to assess their potential as tracers of soil turnover and export. GDGT Δ14C follows similar relationships with basin properties as vegetation-derived lignin phenols and leaf-wax n-alkanoic acids, suggesting that the radiocarbon ages of these compounds are significantly impacted by intermittent soil storage. Systematic radiocarbon age offsets are observable between the studied biomarkers, which are likely caused by different mobilization pathways and/or stabilization by mineral association.