Marine Chemistry and Geochemistry (MC&G)
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Research in MC&G ranges from the glacial history of the Antarctic ice sheet and the formation of surface films in the upper micron of the ocean to the cycling of carbon through various ocean reservoirs, the history of ocean circulation recorded in the growth bands of coral, and the role of hydrothermal vents and seawater-rock interactions on the composition of the oceans.
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ArticleGlobal subterranean estuaries modify groundwater nutrient loading to the ocean(Association for the Sciences of Limnology and Oceanography (ASLO), 2024-05-16)Terrestrial groundwater travels through subterranean estuaries before reaching the sea. Groundwater-derived nutrients drive coastal water quality, primary production, and eutrophication. We determined how dissolved inorganic nitrogen (DIN), dissolved inorganic phosphorus (DIP), and dissolved organic nitrogen (DON) are transformed within subterranean estuaries and estimated submarine groundwater discharge (SGD) nutrient loads compiling > 10,000 groundwater samples from 216 sites worldwide. Nutrients exhibited complex, nonconservative behavior in subterranean estuaries. Fresh groundwater DIN and DIP are usually produced, and DON is consumed during transport. Median total SGD (saline and fresh) fluxes globally were 5.4, 2.6, and 0.18 Tmol yr−1 for DIN, DON, and DIP, respectively. Despite large natural variability, total SGD fluxes likely exceed global riverine nutrient export. Fresh SGD is a small source of new nutrients, but saline SGD is an important source of mostly recycled nutrients. Nutrients exported via SGD via subterranean estuaries are critical to coastal biogeochemistry and a significant nutrient source to the oceans.
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ArticleSpatial and temporal resolution of cyanobacterial bloom chemistry reveals an open-ocean trichodesmium thiebautii as a talented producer of specialized metabolites(American Chemical Society, 2024-05-17)While the ecological role that Trichodesmium sp. play in nitrogen fixation has been widely studied, little information is available on potential specialized metabolites that are associated with blooms and standing stock Trichodesmium colonies. While a collection of biological material from a T. thiebautii bloom event from North Padre Island, Texas, in 2014 indicated that this species was a prolific producer of chlorinated specialized metabolites, additional spatial and temporal resolution was needed. We have completed these metabolite comparison studies, detailed in the current report, utilizing LC-MS/MS-based molecular networking to visualize and annotate the specialized metabolite composition of these Trichodesmium blooms and colonies in the Gulf of Mexico (GoM) and other waters. Our results showed that T. thiebautii blooms and colonies found in the GoM have a remarkably consistent specialized metabolome. Additionally, we isolated and characterized one new macrocyclic compound from T. thiebautii, trichothilone A (1), which was also detected in three independent cultures of T. erythraeum. Genome mining identified genes predicted to synthesize certain functional groups in the T. thiebautii metabolites. These results provoke intriguing questions of how these specialized metabolites affect Trichodesmium ecophysiology, symbioses with marine invertebrates, and niche development in the global oligotrophic ocean.
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ArticleChanging phytoplankton phenology in the marginal ice zone west of the Antarctic Peninsula(Inter-Research Science Publisher, 2024-04-18)Climate change is altering global ocean phenology, the timing of annually occurring biological events. We examined the changing phenology of the phytoplankton accumulation season west of the Antarctic Peninsula to show that blooms are shifting later in the season over time in ice-associated waters. The timing of the start date and peak date of the phytoplankton accumulation season occurred later over time from 1997 to 2022 in the marginal ice zone and over the continental shelf. A divergence was seen between offshore waters and ice-associated waters, with offshore bloom timing becoming earlier, yet marginal ice zone and continental shelf bloom timing shifting later. Higher chlorophyll a (chl a) concentration in the fall season was seen in recent years, especially over the northern continental shelf. Minimal long-term trends in annual chl a occurred, likely due to the combination of later start dates in spring and higher chl a in fall. Increasing spring wind speed is the most likely mechanism for later spring start dates, leading to deeper wind mixing in a region experiencing sea ice loss. Later phytoplankton bloom timing over the marginal ice zone and continental shelf will have consequences for surface ocean carbon uptake, food web dynamics, and trophic cascades.
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ArticleElectrochemical ocean iron fertilization and alkalinity enhancement approach toward CO2 sequestration(Nature Research, 2024-05-14)Achieving net-zero emissions by 2050 requires the development of effective negative emission techniques, including ocean-based approaches for CO2 sequestration. However, the implementation and testing of marine CO2 removal (mCDR) techniques such as ocean iron fertilization (OIF) or ocean alkalinity enhancement (OAE) face significant challenges. Herein, a novel self-operating electrochemical technology is presented that not only combines OIF and OAE, but also recovers hydrogen gas (H2) from seawater, hence offering a promising solution for achieving quantifiable and transparent large-scale mCDR. Experimental results show that the electrochemical OIF (EOIF) can not only increase the concentration of ferrous iron (Fe+2) by 0–0.5 mg/L, but also significantly increases the seawater pH by 8% (i.e., a 25% decrease in the hydrogen ions concentration). The release of iron (Fe+2/Fe+3) can be regulated by adjusting the magnitude of the electric current and its form (e.g., pulsed current and polarity reversal), as well as by optimizing the electrode material and geometry. In certain ocean regions, enhanced iron concentrations stimulate the naturally occurring biological carbon pump (BCP), leading to increased phytoplankton growth, CO2 uptake, and subsequent export of carbon to the deep ocean. Simultaneously, the system increases seawater alkalinity and the buffer capacity, enhancing CO2 solubility and storage in the shallow ocean through the solubility pump. The obtained measurements demonstrate the scalability of EOIF and its ability to operate using solar energy at a lower cost. Overall, the proposed EOIF technology offers a practical, effective, and sustainable solution for addressing climate change on a large scale.
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ArticleTesting the influence of light on nitrite cycling in the eastern tropical North Pacific(European Geosciences Union, 2024-04-23)Light is considered a strong controlling factor of nitrification rates in the surface ocean. Previous work has shown that ammonia oxidation and nitrite oxidation may be inhibited by high light levels, yet active nitrification has been measured in the sunlit surface ocean. While it is known that photosynthetically active radiation (PAR) influences microbial nitrite production and consumption, the level of inhibition of nitrification is variable across datasets. Additionally, phytoplankton have light-dependent mechanisms for nitrite production and consumption that co-occur with nitrification around the depths of the primary nitrite maximum (PNM). In this work, we experimentally determined the direct influence of light level on net nitrite production, including all major nitrite cycling processes (ammonia oxidation, nitrite oxidation, nitrate reduction and nitrite uptake) in microbial communities collected from the base of the euphotic zone. We found that although ammonia oxidation was inhibited at the depth of the PNM and was further inhibited by increasing light at all stations, it remained the dominant nitrite production process at most stations and treatments, even up to 25 % surface PAR. Nitrate addition did not enhance ammonia oxidation in our experiments but may have increased nitrate and nitrite uptake at a coastal station. In contrast to ammonia oxidation, nitrite oxidation was not clearly inhibited by light and sometimes even increased at higher light levels. Thus, accumulation of nitrite at the PNM may be modulated by changes in light, but light perturbations did not exclude nitrification from the surface ocean. Nitrite uptake and nitrate reduction were both enhanced in high-light treatments relative to low light and in some cases showed high rates in the dark. Overall, net nitrite production rates of PNM communities were highest in the dark treatments.
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ArticleUnraveling Environmental Forces Shaping Surface Sediment Geochemical “Isodrapes” in the East Asian Marginal Seas(American Geophysical Union, 2024-04-04)As major sites of carbon burial and remineralization, continental margins are key components of the global carbon cycle. However, heterogeneous sources of organic matter (OM) and depositional environments lead to complex spatial patterns in sedimentary organic carbon (OC) content and composition. To better constrain the processes that control OM cycling, we focus on the East Asian marginal seas as a model system, where we compiled extensive data on the OC content, bulk isotopic composition (δ13C and Δ14C), total nitrogen, and mineral surface area of surficial sediments from previous studies and new measurements. We developed a spatial machine learning modeling framework to predict the spatial distribution of these parameters and identify regions where sediments with similar geochemical signatures drape the seafloor (i.e., “isodrapes”). We demonstrate that both provenance (44%–77%) and hydrodynamic processes (22%–53%) govern the fate of OM in this margin. Hydrodynamic processes can either promote the degradation of OM in mobile mud-belts or preserve it in stable mud-deposits. The distinct isotopic composition of OC sources from marine productivity and individual rivers regulates the age and reactivity of OM deposited on the sea-floor. The East Asian marginal seas can be separated into three main isodrapes: hydrodynamically energetic shelves with coarser-grained sediment depleted in OC, OM-enriched mud deposits, and a deep basin with fine-grained sediments and aged OC affected by long oxygen exposure times and petrogenic input from rivers. This study confirms that both hydrodynamic processes and provenance should be accounted for to understand the fate of OC in continental margins.
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ArticleDiversity of cryptofaunal nematode assemblages along the Jardines de La Reina Coral Reef, Southern Cuba(MDPI, 2024-04-29)Cryptofaunal nematodes, those living on the hard substrate of the coral reefs, are largely unknown in terms of diversity and assemblage structure. We described nematode assemblages at seven sites spanning about 200 km along Jardines de La Reina, a well-preserved reef system in the Greater Antilles. We identified about 3000 nematodes, mostly of the families Desmodoridae and Chromadoridae; the most abundant species were Croconema cinctum, Desmodora communis, and Euchromadora vulgaris. The regional richness was moderate with 70 observed species (0.95 confidence interval: 65–75 species) and 75 extrapolated species (0.95 CI: 68–83 species). This richness was lower than in other reef biotopes, maybe reflecting evolutionary constraints due to interactions with stony corals. The local expected richness at 100 individuals was similar among sites, with a median of 26 species (0.95 CI: 20–34 species), and likely caused by diversification rate and evolutionary time acting at the same pace on populations. The taxonomic β-diversity was high and without differences among sites (median: 0.85; 0.95 CI: 0.33–1), probably due to significant substrate heterogeneity at 10-cm scale. The prevalence of replacement over richness difference suggests that local processes (e.g., environmental filtering and competition) contribute more to β-diversity than niche availability, which would be largely similar across the reef terraces. Contrary to our expectations, no gradient of assemblage structure occurred, nor significant effect of benthic cover on nematodes. However, nematode functional structure showed a conservative set of biological traits reflecting adaptations to hydrodynamic regime: armed oral cavity/intermediate colonizing capability/ornamented cuticles/conical tail. Our results provide insights about the taxonomic and functional diversity of nematodes and highlight the vast knowledge gaps about the processes ruling the meiofauna community structure in coral reefs.
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ArticleControls on dissolved barium and radium-226 distributions in the Pacific Ocean along GEOTRACES GP15(American Geophysical Union, 2024-06-10)Radium-226(226Ra) and barium (Ba) exhibit similar chemical behaviors and distributions in the marine environment, serving as valuable tracers of water masses, ocean mixing, and productivity. Despite their similar distributions, these elements originate from distinct sources and undergo disparate biogeochemical cycles, which might complicate the use of these tracers. In this study, we investigate these processes by analyzing a full-depth ocean section of 226Ra activities (T1/2 = 1,600 years) and barium concentrations obtained from samples collected along the US GEOTRACES GP15 Pacific Meridional Transect during September–November 2018, spanning from Alaska to Tahiti. We find that surface waters possess low levels of 226Ra and Ba due to export of sinking particulates, surpassing inputs from the continental margins. In contrast, deep waters have higher 226Ra activities and Ba concentrations due to inputs from particle regeneration and sedimentary sources, with 226Ra inputs primarily resulting from the decay of 230Th in sediments. Further, dissolved 226Ra and Ba exhibit a strong correlation along the GP15 section. To elucidate the drivers of the correlation, we used a water mass analysis, enabling us to quantify the influence of water mass mixing relative to non-conservative processes. While a significant fraction of each element's distribution can be explained by conservative mixing, a considerable fraction cannot. The balance is driven using non-conservative processes, such as sedimentary, rivers, or hydrothermal inputs, uptake and export by particles, and particle remineralization. Our study demonstrates the utility of 226Ra and Ba as valuable biogeochemical tracers for understanding ocean processes, while shedding light on conservative and myriad non-conservative processes that shape their respective distributions.
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ArticleAmeripathidae, a new family of antipatharian corals (Cnidaria, Anthozoa, Hexacorallia, Antipatharia)(Pensoft Publishers, 2024-05-31)A new family of antipatharian corals, Ameripathidae (Cnidaria: Anthozoa: Antipatharia), is established for Ameripathes pseudomyriophylla Opresko & Horowitz, gen. et sp. nov. The new family resembles Myriopathidae and Stylopathidae in terms of the morphology of the polyps and tentacles and the pinnulate branching of the corallum. Phylogenetic analysis using a genomic data set of 741 conserved element loci indicates that the new family is sister to a clade containing the Myriopathidae, Stylopathidae, Antipathidae, and Aphanipathidae.
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ArticleSea Grant Network contributions to the National Ocean and Coastal Acidification Response(Oceanography Society, 2024-04-29)The Sea Grant network has made significant contributions to ocean and coastal acidification (OCA) research through partnerships and investments, education and participatory science opportunities, workforce development, translation into aquaculture applications, and policy blueprints. This study reviewed these contributions using programmatic assessments, bibliographic sources, and case studies. From 2008 until 2021, investments surpassed $22M and funded 106 projects across 22 of the 34 Sea Grant programs. This funding and key partnerships have supported the theses of 80 graduate students and 11 research fellows. In addition, 14 Sea Grant Knauss Marine Policy Fellows have been funded by the NOAA Ocean Acidification Program in OCA graduate experiences. The Sea Grant network plays an integrative role across research institutions, decision-making bodies, and coastal industries, and is well positioned to continue offering opportunities and novel insights to advance applied research and action to mitigate and adapt for OCA impacts on marine resources and ecosystems.
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ArticlePredicting metabolic modules in incomplete bacterial genomes with MetaPathPredict(eLife Sciences Publications, 2024-05-02)The reconstruction of complete microbial metabolic pathways using ‘omics data from environmental samples remains challenging. Computational pipelines for pathway reconstruction that utilize machine learning methods to predict the presence or absence of KEGG modules in incomplete genomes are lacking. Here, we present MetaPathPredict, a software tool that incorporates machine learning models to predict the presence of complete KEGG modules within bacterial genomic datasets. Using gene annotation data and information from the KEGG module database, MetaPathPredict employs deep learning models to predict the presence of KEGG modules in a genome. MetaPathPredict can be used as a command line tool or as a Python module, and both options are designed to be run locally or on a compute cluster. Benchmarks show that MetaPathPredict makes robust predictions of KEGG module presence within highly incomplete genomes.
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ArticleViral infection leads to a unique suite of allelopathic chemical signals in three diatom host-virus pairs(MDPI, 2024-05-17)Ecophysiological stress and the grazing of diatoms are known to elicit the production of chemical defense compounds called oxylipins, which are toxic to a wide range of marine organisms. Here we show that (1) the viral infection and lysis of diatoms resulted in oxylipin production; (2) the suite of compounds produced depended on the diatom host and the infecting virus; and (3) the virus-mediated oxylipidome was distinct, in both magnitude and diversity, from oxylipins produced due to stress associated with the growth phase. We used high-resolution accurate-mass mass spectrometry to observe changes in the dissolved lipidome of diatom cells infected with viruses over 3 to 4 days, compared to diatom cells in exponential, stationary, and decline phases of growth. Three host virus pairs were used as model systems: Chaetoceros tenuissimus infected with CtenDNAV; C. tenuissimus infected with CtenRNAV; and Chaetoceros socialis infected with CsfrRNAV. Several of the compounds that were significantly overproduced during viral infection are known to decrease the reproductive success of copepods and interfere with microzooplankton grazing. Specifically, oxylipins associated with allelopathy towards zooplankton from the 6-, 9-, 11-, and 15-lipogenase (LOX) pathways were significantly more abundant during viral lysis. 9-hydroperoxy hexadecatetraenoic acid was identified as the strongest biomarker for the infection of Chaetoceros diatoms. C. tenuissimus produced longer, more oxidized oxylipins when lysed by CtenRNAV compared to CtenDNAV. However, CtenDNAV caused a more statistically significant response in the lipidome, producing more oxylipins from known diatom LOX pathways than CtenRNAV. A smaller set of compounds was significantly more abundant in stationary and declining C. tenuissimus and C. socialis controls. Two allelopathic oxylipins in the 15-LOX pathway and essential fatty acids, arachidonic acid (ARA), eicosapentaenoic acid (EPA), and docosahexaenoic acid (DHA) were more abundant in the stationary phase than during the lysis of C. socialis. The host–virus pair comparisons underscore the species-level differences in oxylipin production and the value of screening more host–virus systems. We propose that the viral infection of diatoms elicits chemical defense via oxylipins which deters grazing with downstream trophic and biogeochemical effects.
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ArticleDraft genome sequence of Methanocalculus natronophilus sp. Strain Z-7105T, an alkaliphilic, methanogenic archaeon isolated from a soda lake(American Society for Microbiology, 2024-06-04)A methanogenic archaeon was isolated from bottom sediments in the vicinity of Lake Tanatar II (Altai, Russia), an alkaline soda lake. Here we present the draft genome sequence of Methanocalculus natronophilus sp. strain Z-7105T.
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ArticleThe importance of riverine nutrient supply for the marine silica pump of Arctic shelves: evidence from the Laptev Sea(American Geophysical Union, 2024-03-27)Arctic shelves receive a large load of nutrients from Arctic rivers, which play a major role in the biogeochemical cycles of the Arctic Ocean. In this study, we present measurements of dissolved silicon isotopes (δ30Si(OH)4) around the Laptev Sea and surface waters of the Eurasian shelves collected in October 2018 to document terrestrial silicon modifications on shelves and their contribution to the Arctic basin. Nitrogen was found to be depleted in surface waters and the limiting nutrient to primary production in the Laptev Sea, allowing excess silicon export to the central Arctic Ocean. Heavy δ30Si(OH)4 in the water column was linked to the strong biological removal of DSi on shelves, enabled by vigorous N recycling. From isotopically constrained processes, we estimate that >50% of the silicon from riverine inputs is removed within the Lena River delta and on the Laptev Sea shelf. Extrapolating this to major Siberian rivers, this leads to an export of 2.5 ± 0.8 kmol/s of riverine silicon through the Transpolar Drift. An updated isotopic budget of the Arctic Ocean reproduces the observed δ30Si(OH)4 signatures out of the Arctic Ocean and underlines the importance of biological processes in modulating silicon export. Given that opal burial fluxes on Artic shelves are controlled by denitrification and N-limitation, these processes are sensitive to ongoing climate change. As a consequence of higher riverine DSi inputs and shelf denitrification responding to productivity, it is inferred that silicon export from the Arctic Ocean could increase in the future, accompanied by lighter δ30Si(OH)4 signatures.
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ArticleAssessment of global ocean biogeochemistry models for ocean carbon sink estimates in RECCAP2 and recommendations for future studies(American Geophysical Union, 2024-03-14)The ocean is a major carbon sink and takes up 25%–30% of the anthropogenically emitted CO2. A state-of-the-art method to quantify this sink are global ocean biogeochemistry models (GOBMs), but their simulated CO2 uptake differs between models and is systematically lower than estimates based on statistical methods using surface ocean pCO2 and interior ocean measurements. Here, we provide an in-depth evaluation of ocean carbon sink estimates from 1980 to 2018 from a GOBM ensemble. As sources of inter-model differences and ensemble-mean biases our study identifies (a) the model setup, such as the length of the spin-up, the starting date of the simulation, and carbon fluxes from rivers and into sediments, (b) the simulated ocean circulation, such as Atlantic Meridional Overturning Circulation and Southern Ocean mode and intermediate water formation, and (c) the simulated oceanic buffer capacity. Our analysis suggests that a late starting date and biases in the ocean circulation cause a too low anthropogenic CO2 uptake across the GOBM ensemble. Surface ocean biogeochemistry biases might also cause simulated anthropogenic fluxes to be too low, but the current setup prevents a robust assessment. For simulations of the ocean carbon sink, we recommend in the short-term to (a) start simulations at a common date before the industrialization and the associated atmospheric CO2 increase, (b) conduct a sufficiently long spin-up such that the GOBMs reach steady-state, and (c) provide key metrics for circulation, biogeochemistry, and the land-ocean interface. In the long-term, we recommend improving the representation of these metrics in the GOBMs.
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ArticleDevelopment of the channelized optical system II for in situ, high-frequency measurements of dissolved inorganic carbon in seawater(American Chemical Society, 2024-03-25)This study describes the development of the CHANnelized Optical System II (CHANOS II), an autonomous, in situ sensor capable of measuring seawater dissolved inorganic carbon (DIC) at high frequency (up to ∼1 Hz). In this sensor, CO2 from acidified seawater is dynamically equilibrated with a pH-sensitive indicator dye encapsulated in gas-permeable Teflon AF 2400 tubing. The pH in the CO2 equilibrated indicator is measured spectrophotometrically and can be quantitatively correlated to the sample DIC. Ground-truthed field data demonstrate the sensor’s capabilities in both time-series measurements and surface mapping in two coastal sites across tidal cycles. CHANOS II achieved an accuracy and precision of ±5.9 and ±5.5 μmol kg–1. The mean difference between traditional bottle and sensor measurements was −3.7 ± 10.0 (1σ) μmol kg–1. The sensor can perform calibration in situ using Certified Reference Materials (CRMs) to ensure measurement quality. The coastal time-series measurements highlight high-frequency variability and episodic biogeochemical shifts that are difficult to capture by traditional methods. Surface DIC mapping shows multiple endmembers in an estuary and highlights fine-scale spatial variabilities of DIC. The development of CHANOS II demonstrates a significant technological advance in seawater CO2 system sensing, which enables high-resolution, subsurface time-series, and profiling deployments.
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ArticleProteomics analysis reveals differential acclimation of coastal and oceanic Synechococcus to climate warming and iron limitation(Frontiers Media, 2024-02-20)In many oceanic regions, anthropogenic warming will coincide with iron (Fe) limitation. Interactive effects between warming and Fe limitation on phytoplankton physiology and biochemical function are likely, as temperature and Fe availability affect many of the same essential cellular pathways. However, we lack a clear understanding of how globally significant phytoplankton such as the picocyanobacteria Synechococcus will respond to these co-occurring stressors, and what underlying molecular mechanisms will drive this response. Moreover, ecotype-specific adaptations can lead to nuanced differences in responses between strains. In this study, Synechococcus isolates YX04-1 (oceanic) and XM-24 (coastal) from the South China Sea were acclimated to Fe limitation at two temperatures, and their physiological and proteomic responses were compared. Both strains exhibited reduced growth due to warming and Fe limitation. However, coastal XM-24 maintained relatively higher growth rates in response to warming under replete Fe, while its growth was notably more compromised under Fe limitation at both temperatures compared with YX04-1. In response to concurrent heat and Fe stress, oceanic YX04-1 was better able to adjust its photosynthetic proteins and minimize the generation of reactive oxygen species while reducing proteome Fe demand. Its intricate proteomic response likely enabled oceanic YX04-1 to mitigate some of the negative impact of warming on its growth during Fe limitation. Our study highlights how ecologically-shaped adaptations in Synechococcus strains even from proximate oceanic regions can lead to differing physiological and proteomic responses to these climate stressors.
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ArticleDecreasing body size is associated with reduced calving probability in critically endangered North Atlantic right whales(Royal Society of Chemistry, 2024-02-28)Body size is key to many life-history processes, including reproduction. Across species, climate change and other stressors have caused reductions in the body size to which animals can grow, called asymptotic size, with consequences for demography. A reduction in mean asymptotic length was documented for critically endangered North Atlantic right whales, in parallel with declines in health and vital rates resulting from human activities and environmental changes. Here, we tested whether smaller body size was associated with lower reproductive output, using a state-space model for individual health, survival and reproduction that quantifies the mechanistic links between these processes. Body size (as represented by the cube of length) was strongly associated with a female's calving probability at each reproductive opportunity. This relationship explained 62% of the variation in calving among reproductive females, along with their decreasing health (20%). The effects of decreasing mean body size on reproductive performance are another concerning indication of the worsening prospects for this species and many others affected by environmental change, requiring a focus of conservation and management interventions on improving conditions that affect reproduction as well as reducing mortality.
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ArticleA model for community-driven development of best practices: The Ocean Observatories Initiative biogeochemical sensor data best practices and user guide(Frontiers Media, 2024-04-03)The field of oceanography is transitioning from data-poor to data-rich, thanks in part to increased deployment of in-situ platforms and sensors, such as those that instrument the US-funded Ocean Observatories Initiative (OOI). However, generating science-ready data products from these sensors, particularly those making biogeochemical measurements, often requires extensive end-user calibration and validation procedures, which can present a significant barrier. Openly available community-developed and -vetted Best Practices contribute to overcoming such barriers, but collaboratively developing user-friendly Best Practices can be challenging. Here we describe the process undertaken by the NSF-funded OOI Biogeochemical Sensor Data Working Group to develop Best Practices for creating science-ready biogeochemical data products from OOI data, culminating in the publication of the GOOS-endorsed OOI Biogeochemical Sensor Data Best Practices and User Guide. For Best Practices related to ocean observatories, engaging observatory staff is crucial, but having a “user-defined” process ensures the final product addresses user needs. Our process prioritized bringing together a diverse team and creating an inclusive environment where all participants could effectively contribute. Incorporating the perspectives of a wide range of experts and prospective end users through an iterative review process that included “Beta Testers’’ enabled us to produce a final product that combines technical information with a user-friendly structure that illustrates data analysis pipelines via flowcharts and worked examples accompanied by pseudo-code. Our process and its impact on improving the accessibility and utility of the end product provides a roadmap for other groups undertaking similar community-driven activities to develop and disseminate new Ocean Best Practices.
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ArticleMonitoring changes to alkenone biosynthesis in commercial Tisochrysis lutea Microalgae(American Chemical Society, 2024-03-27)Alkenones are unique lipids produced by certain species of microalgae, well-known for use in paleoclimatology, and more recently pursued to advance sustainability across multiple industries. Beginning in 2018, the biosynthesis of alkenones by commercially grown Tisochrysis lutea (T-Iso) microalgae from one of the world’s most established producers, Necton S.A., changed dramatically from structures containing 37 and 38 carbons, to unusual shorter-chain C35 and C36 diunsaturated alkenones (C35:2 and C36:2 alkenones). While the exact reasons for this change remain unknown, analysis of alkenones isolated from T-Iso grown in 2021 and 2023 revealed that this change has persisted. The structure of these rare shorter-chain alkenones, including double bond position, produced by Necton T-Iso remained the same over the last five years, which was determined using a new and optimized cross-metathesis derivatization approach with analysis by comprehensive two-dimensional gas chromatography and NMR. However, noticeable differences in the alkenone profiles among the different batches were observed. Combined with fatty acid compositional analysis, the data suggest a connection between these lipid classes (e.g., increased DHA corresponds to lower amounts of shorter-chain alkenones) and the ability to manipulate their biosynthesis in T-Iso with changes to cultivation conditions.