Presentations and Papers

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https://hdl.handle.net/1912/12

This collection represents presentations made by members of the staff of the MBLWHOI Library or at the behest of the Library, and articles authored by members of the Library staff.

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  • Article
    A cell atlas of the larval Aedes aegypti ventral nerve cord
    (BMC, 2024-01-31) Yin, Chang ; Morita, Takeshi ; Parrish, Jay Z.
    Mosquito-borne diseases account for nearly 1 million human deaths annually, yet we have a limited understanding of developmental events that influence host-seeking behavior and pathogen transmission in mosquitoes. Mosquito-borne pathogens are transmitted during blood meals, hence adult mosquito behavior and physiology have been intensely studied. However, events during larval development shape adult traits, larvae respond to many of the same sensory cues as adults, and larvae are susceptible to infection by many of the same disease-causing agents as adults. Hence, a better understanding of larval physiology will directly inform our understanding of physiological processes in adults. Here, we use single cell RNA sequencing (scRNA-seq) to provide a comprehensive view of cellular composition in the Aedes aegypti larval ventral nerve cord (VNC), a central hub of sensory inputs and motor outputs which additionally controls multiple aspects of larval physiology. We identify more than 35 VNC cell types defined in part by neurotransmitter and neuropeptide expression. We also explore diversity among monoaminergic and peptidergic neurons that likely control key elements of larval physiology and developmental timing, and identify neuroblasts and immature neurons, providing a view of neuronal differentiation in the VNC. Finally, we find that larval cell composition, number, and position are preserved in the adult abdominal VNC, suggesting studies of larval VNC form and function will likely directly inform our understanding adult mosquito physiology. Altogether, these studies provide a framework for targeted analysis of VNC development and neuronal function in Aedes aegypti larvae.
  • Article
    A cryptic plasmid is among the most numerous genetic elements in the human gut
    (Elsevier, 2024-02-29) Fogarty, Emily C. ; Schechter, Matthew S. ; Lolans, Karen ; Sheahan, Madeline L. ; Veseli, Iva A. ; Moore, Ryan M. ; Kiefl, Evan ; Moody, Thomas ; Rice, Phoebe A. ; Yu, Michael K. ; Mimee, Mark ; Chang, Eugene B. ; Ruscheweyh, Hans-Joachim ; Sunagawa, Shinichi ; McLellan, Sandra L. ; Willis, Amy D. ; Comstock, Laurie E. ; Eren, A. Murat
    Plasmids are extrachromosomal genetic elements that often encode fitness-enhancing features. However, many bacteria carry “cryptic” plasmids that do not confer clear beneficial functions. We identified one such cryptic plasmid, pBI143, which is ubiquitous across industrialized gut microbiomes and is 14 times as numerous as crAssphage, currently established as the most abundant extrachromosomal genetic element in the human gut. The majority of mutations in pBI143 accumulate in specific positions across thousands of metagenomes, indicating strong purifying selection. pBI143 is monoclonal in most individuals, likely due to the priority effect of the version first acquired, often from one’s mother. pBI143 can transfer between Bacteroidales, and although it does not appear to impact bacterial host fitness in vivo, it can transiently acquire additional genetic content. We identified important practical applications of pBI143, including its use in identifying human fecal contamination and its potential as an alternative approach to track human colonic inflammatory states.
  • Article
    A framework for multidisciplinary science observations from commercial ships
    (Oxford University Press, 2024-02-19) Macdonald, Alison M. ; Hiron, Luna ; McRaven, Leah T. ; Stolp, Laura ; Strom, Kerry ; Hudak, Rebecca ; Smith, Shawn R. ; Hummon, Julia M. ; Andres, Magdalena
    Science Research on Commercial Ships (Science RoCS) is a grassroots multi-institution group of scientists, engineers, data managers, and administrators seeking to further research opportunities by equipping commercial vessels with suites of maritime appropriate scientific sensors operated autonomously on regular ship routes with minimal crew intervention. Science RoCS aims to foster cooperation between the shipping industry and scientific community at a level that will be transformative for societally relevant ocean science, promote cross-disciplinary ocean science through simultaneous observation of the air/sea interface and water column, and spur a technological revolution in observational oceanography by developing new turnkey, maritime-industry-appropriate scientific equipment whose data streams can be used to stimulate innovations in oceanic (physical, chemical, and biological) understanding and forecasting. We envision a future where scientific data collection on commercial ships is the new industry standard, providing repeat measurements in undersampled, remote regions, on scales not otherwise accessible to the scientific community.
  • Article
    A free and user-friendly software protocol for the quantification of microfauna swimming behavior
    (Taylor and Francis Group, 2024-02-29) McMaken, Colleen M. ; Gribble, Kristin E.
    Characterizing swimming behavior can provide a holistic assessment of the health, physiology and ecology of microfaunal species when done in conjunction with measuring other biological parameters. However, tracking and quantifying microfauna swimming behavior using existing automated tools is often difficult due to the animals' small size or transparency, or because of the high cost, expertise, or labor needed for the analysis. To address these issues, we created a cost-effective, user-friendly protocol for behavior analysis that employs the free software packages HitFilm and ToxTrac along with the R package ‘trajr’ and used the method to quantify the behavior of rotifers. This protocol can be used for other microfaunal species for which investigators may face similar issues in obtaining measurements of swimming behavior.
  • Article
    A marine heatwave changes the stabilizing effects of biodiversity in kelp forests
    (Ecological Society of America, 2024-03-24) Liang, Maowei ; Lamy, Thomas ; Reuman, Daniel C. ; Wang, Shaopeng ; Bell, Tom W. ; Cavanaugh, Kyle C. ; Castorani, Max C. N.
    Biodiversity can stabilize ecological communities through biological insurance, but climate and other environmental changes may disrupt this process via simultaneous ecosystem destabilization and biodiversity loss. While changes to diversity–stability relationships (DSRs) and the underlying mechanisms have been extensively explored in terrestrial plant communities, this topic remains largely unexplored in benthic marine ecosystems that comprise diverse assemblages of producers and consumers. By analyzing two decades of kelp forest biodiversity survey data, we discovered changes in diversity, stability, and their relationships at multiple scales (biological organizational levels, spatial scales, and functional groups) that were linked with the most severe marine heatwave ever documented in the North Pacific Ocean. Moreover, changes in the strength of DSRs during/after the heatwave were more apparent among functional groups than both biological organizational levels (population vs. ecosystem levels) and spatial scales (local vs. broad scales). Specifically, the strength of DSRs decreased for fishes, increased for mobile invertebrates and understory algae, and were unchanged for sessile invertebrates during/after the heatwave. Our findings suggest that biodiversity plays a key role in stabilizing marine ecosystems, but the resilience of DSRs to adverse climate impacts primarily depends on the functional identities of ecological communities.
  • Article
    A model for community-driven development of best practices: The Ocean Observatories Initiative biogeochemical sensor data best practices and user guide
    (Frontiers Media, 2024-04-03) Palevsky, Hilary I. ; Clayton, Sophie A. ; Benway, Heather M. ; Maheigan, Mairead ; Atamanchuk, Dariia ; Battisti, Roman ; Batryn, Jennifer ; Bourbonnais, Annie ; Briggs, Ellen M. ; Carvalho, Filipa ; Chase, Alison P. ; Eveleth, Rachel ; Fatland, Rob ; Fogaren, Kristen E. ; Fram, Jonathan Peter ; Hartman, Susan E. ; Le Bras, Isabela ; Manning, Cara C. ; Needoba, Joseph A. ; Neely, Merrie Beth ; Oliver, Hilde ; Reed, Andrew C. ; Rheuban, Jennie E. ; Schallenberg, Christina ; Walsh, Ian ; Wingard, Christopher ; Bauer, Kohen ; Chen, Baoshan ; Cuevas, Jose ; Flecha, Susana ; Horwith, Micah ; Melendez, Melissa ; Menz, Tyler ; Rivero-Calle, Sara ; Roden, Nicholas P. ; Steinhoff, Tobias ; Trucco-Pignata, Pablo Nicolas ; Vardaro, Michael F. ; Yoder, Meg
    The field of oceanography is transitioning from data-poor to data-rich, thanks in part to increased deployment of in-situ platforms and sensors, such as those that instrument the US-funded Ocean Observatories Initiative (OOI). However, generating science-ready data products from these sensors, particularly those making biogeochemical measurements, often requires extensive end-user calibration and validation procedures, which can present a significant barrier. Openly available community-developed and -vetted Best Practices contribute to overcoming such barriers, but collaboratively developing user-friendly Best Practices can be challenging. Here we describe the process undertaken by the NSF-funded OOI Biogeochemical Sensor Data Working Group to develop Best Practices for creating science-ready biogeochemical data products from OOI data, culminating in the publication of the GOOS-endorsed OOI Biogeochemical Sensor Data Best Practices and User Guide. For Best Practices related to ocean observatories, engaging observatory staff is crucial, but having a “user-defined” process ensures the final product addresses user needs. Our process prioritized bringing together a diverse team and creating an inclusive environment where all participants could effectively contribute. Incorporating the perspectives of a wide range of experts and prospective end users through an iterative review process that included “Beta Testers’’ enabled us to produce a final product that combines technical information with a user-friendly structure that illustrates data analysis pipelines via flowcharts and worked examples accompanied by pseudo-code. Our process and its impact on improving the accessibility and utility of the end product provides a roadmap for other groups undertaking similar community-driven activities to develop and disseminate new Ocean Best Practices.
  • Article
    A novel conjugative transposon carrying an autonomously amplified plasmid
    (American Society for Microbiology, 2024-01-23) Vineis, Joseph H. ; Reznikoff, William S. ; Antonopoulos, Dionysios A. ; Koval, Jason ; Chang, Eugene B. ; Fallon, Bailey R. ; Paul, Blair G. ; Morrison, Hilary G. ; Sogin, Mitchell L.
    Tetracyclines serve as broad-spectrum antibiotics to treat bacterial infections. The discovery of new tetracycline resistance genes has led to new questions about the underlying mechanisms of resistance, gene transfer, and their relevance to human health. We tracked changes in the abundance of a 55-kbp conjugative transposon (CTn214) carrying tetQ, a tetracycline resistance gene, within a Bacteroides fragilis metagenome-assembled genome derived from shotgun sequencing of microbial DNA extracted from the ileal pouch of a patient with ulcerative colitis. The mapping of metagenomic reads to CTn214 revealed the multi-copy nature of a 17,044-nt region containing tetQ in samples collected during inflammation and uninflamed visits. B. fragilis cultivars isolated from the same patient during periods of inflammation harbored CTn214 integrated into the chromosome or both a circular, multi-copy, extrachromosomal region of the CTn214 containing tetQ and the corresponding integrated form. The tetracycline-dependent mechanism for the transmission of CTn214 is nearly identical to a common conjugative transposon found in the genome of B. fragilis (CTnDOT), but the autonomously amplified nature of a circular 17,044-nt region of CTn214 that codes for tetQ and the integration of the same sequence in the linear chromosome within the same cell is a novel observation. Genome and transcriptome sequencing of B. fragilis cultivars grown under different concentrations of tetracycline and ciprofloxacin indicates that tetQ in strains containing the circular form remains actively expressed regardless of treatment, while the expression of tetQ in strains containing the linear form increases only in the presence of tetracycline.
  • Article
    A PCR-based survey of methane-cycling archaea in methane-soaked subsurface sediments of Guaymas Basin, Gulf of California
    (MDPI, 2023-12-10) Hinkle, John E. ; Mara, Paraskevi ; Beaudoin, David J. ; Edgcomb, Virginia P. ; Teske, Andreas P.
    The Guaymas Basin in the Gulf of California is characterized by active seafloor spreading, the rapid deposition of organic-rich sediments, steep geothermal gradients, and abundant methane of mixed thermogenic and microbial origin. Subsurface sediment samples from eight drilling sites with distinct geochemical and thermal profiles were selected for DNA extraction and PCR amplification to explore the diversity of methane-cycling archaea in the Guaymas Basin subsurface. We performed PCR amplifications with general (mcrIRD), and ANME-1 specific primers that target the alpha (α) subunit of methyl coenzyme M reductase (mcrA). Diverse ANME-1 lineages associated with anaerobic methane oxidation were detected in seven out of the eight drilling sites, preferentially around the methane-sulfate interface, and in several cases, showed preferences for specific sampling sites. Phylogenetically, most ANME-1 sequences from the Guaymas Basin subsurface were related to marine mud volcanoes, seep sites, and the shallow marine subsurface. The most frequently recovered methanogenic phylotypes were closely affiliated with the hyperthermophilic Methanocaldococcaceae, and found at the hydrothermally influenced Ringvent site. The coolest drilling site, in the northern axial trough of Guaymas Basin, yielded the greatest diversity in methanogen lineages. Our survey indicates the potential for extensive microbial methane cycling within subsurface sediments of Guaymas Basin.
  • Article
    A single Prochlorococcus ecotype dominates the tropical Bay of Bengal with ultradian growth
    (Wiley, 2024-03-22) Grone, Jonathan ; Poirier, Camille ; Abbott, Kathleen ; Wittmers, Fabian ; Spiro Jaeger, Gualtiero ; Mahadevan, Amala ; Worden, Alexandra Z.
    The Bay of Bengal (BoB) spans >2.2 million km2 in the northeastern Indian Ocean and is bordered by dense populations that depend upon its resources. Over recent decades, a shift from larger phytoplankton to picoplankton has been reported, yet the abundance, activity, and composition of primary producer communities are not well-characterized. We analysed the BoB regions during the summer monsoon. Prochlorococcus ranged up to 3.14 × 105 cells mL−1 in the surface mixed layer, averaging 1.74 ± 0.46 × 105 in the upper 10 m and consistently higher than Synechococcus and eukaryotic phytoplankton. V1-V2 rRNA gene amplicon analyses showed the High Light II (HLII) ecotype formed 98 ± 1% of Prochlorococcus amplicons in surface waters, comprising six oligotypes, with the dominant oligotype accounting for 65 ± 4% of HLII. Diel sampling of a coherent water mass demonstrated evening onset of cell division and rapid Prochlorococcus growth between 1.5 and 3.1 div day−1, based on cell cycle analysis, as confirmed by abundance-based estimates of 2.1 div day−1. Accumulation of Prochlorococcus produced by ultradian growth was restricted by high loss rates. Alongside prior Arabian Sea and tropical Atlantic rates, our results indicate Prochlorococcus growth rates should be reevaluated with greater attention to latitudinal zones and influences on contributions to global primary production.
  • Article
    A synthesis of global coastal ocean greenhouse gas fluxes
    (American Geophysical Union, 2024-01-20) Resplandy, Laure ; Hogikyan, Allison ; Muller, Jens Daniel ; Najjar, Raymond G. ; Bange, Hermann W. ; Bianchi, Daniele ; Weber, Thomas ; Cai, Wei-Jun ; Doney, Scott C. ; Fennel, Katja ; Gehlen, Marion ; Hauck, Judith ; Lacroix, Fabrice ; Landschutzer, Peter ; Le Quere, Corinne ; Roobaert, Alizee ; Schwinger, Jorg ; Berthet, Sarah ; Bopp, Laurent ; Chau, Thi Tuyet Trang ; Dai, Minhan ; Gruber, Nicolas ; Ilyina, Tatiana ; Kock, Annette ; Manizza, Manfredi ; Lachkar, Zouhair ; Laruelle, Goulven G. ; Liao, Enhui ; Lima, Ivan D. ; Nissen, Cara ; Rodenbeck, Christian ; Seferian, Roland ; Toyama, Katsuya ; Tsujino, Hiroyuki ; Regnier, Pierre
    The coastal ocean contributes to regulating atmospheric greenhouse gas concentrations by taking up carbon dioxide (CO2) and releasing nitrous oxide (N2O) and methane (CH4). In this second phase of the Regional Carbon Cycle Assessment and Processes (RECCAP2), we quantify global coastal ocean fluxes of CO2, N2O and CH4 using an ensemble of global gap-filled observation-based products and ocean biogeochemical models. The global coastal ocean is a net sink of CO2 in both observational products and models, but the magnitude of the median net global coastal uptake is ∼60% larger in models (−0.72 vs. −0.44 PgC year−1, 1998–2018, coastal ocean extending to 300 km offshore or 1,000 m isobath with area of 77 million km2). We attribute most of this model-product difference to the seasonality in sea surface CO2 partial pressure at mid- and high-latitudes, where models simulate stronger winter CO2 uptake. The coastal ocean CO2 sink has increased in the past decades but the available time-resolving observation-based products and models show large discrepancies in the magnitude of this increase. The global coastal ocean is a major source of N2O (+0.70 PgCO2-e year−1 in observational product and +0.54 PgCO2-e year−1 in model median) and CH4 (+0.21 PgCO2-e year−1 in observational product), which offsets a substantial proportion of the coastal CO2 uptake in the net radiative balance (30%–60% in CO2-equivalents), highlighting the importance of considering the three greenhouse gases when examining the influence of the coastal ocean on climate.
  • Article
    Above- and belowground plant mercury dynamics in a salt marsh estuary in Massachusetts, USA
    (European Geosciences Union, 2024-03-20) Wang, Ting ; Du, Buyun ; Forbrich, Inke ; Zhou, Jun ; Polen, Joshua ; Sunderland, Elsie M. ; Balcom, Prentiss H. ; Chen, Celia ; Obrist, Daniel
    Estuaries are a conduit of mercury (Hg) from watersheds to the coastal ocean, and salt marshes play an important role in coastal Hg cycling. Hg cycling in upland terrestrial ecosystems has been well studied, but processes in densely vegetated salt marsh ecosystems are poorly characterized. We investigated Hg dynamics in vegetation and soils in the Plum Island Sound estuary in Massachusetts, USA, and specifically assessed the role of marsh vegetation for Hg deposition and turnover. Monthly quantitative harvesting of aboveground biomass showed strong linear seasonal increases in Hg associated with plants, with a 4-fold increase in Hg concentration and an 8-fold increase in standing Hg mass from June (3.9 ± 0.2 µg kg−1 and 0.7 ± 0.4 µg m−2, respectively) to November (16.2 ± 2.0 µg kg−1 and 5.7 ± 2.1 µg m−2, respectively). Hg did not increase further in aboveground biomass after plant senescence, indicating physiological controls of vegetation Hg uptake in salt marsh plants. Hg concentrations in live roots and live rhizomes were 11 and 2 times higher than concentrations in live aboveground biomass, respectively. Furthermore, live belowground biomass Hg pools (Hg in roots and rhizomes, 108.1 ± 83.4 µg m−2) were more than 10 times larger than peak standing aboveground Hg pools (9.0 ± 3.3 µg m−2). A ternary mixing model of measured stable Hg isotopes suggests that Hg sources in marsh aboveground tissues originate from about equal contributions of root uptake (∼ 35 %), precipitation uptake (∼ 33 %), and atmospheric gaseous elemental mercury (GEM) uptake (∼ 32 %). These results suggest a more important role of Hg transport from belowground (i.e., roots) to aboveground tissues in salt marsh vegetation than upland vegetation, where GEM uptake is generally the dominant Hg source. Roots and soils showed similar isotopic signatures, suggesting that belowground tissue Hg mostly derived from soil uptake. Annual root turnover results in large internal Hg recycling between soils and plants, estimated at 58.6 µg m−2 yr−1. An initial mass balance of Hg indicates that the salt marsh presently serves as a small net Hg sink for environmental Hg of 5.2 µg m−2 yr−1.
  • Article
    Accelerometer-based predictions of behaviour elucidate factors affecting the daily activity patterns of spotted hyenas
    (Royal Society of Chemistry, 2023-11-08) Minasandra, Pranav ; Jensen, Frants H. ; Gersick, Andrew S. ; Holekamp, Kay E. ; Strauss, Eli D. ; Strandburg-Peshkin, Ariana
    Animal activity patterns are highly variable and influenced by internal and external factors, including social processes. Quantifying activity patterns in natural settings can be challenging, as it is difficult to monitor animals over long time periods. Here, we developed and validated a machine-learning-based classifier to identify behavioural states from accelerometer data of wild spotted hyenas (Crocuta crocuta), social carnivores that live in large fission–fusion societies. By combining this classifier with continuous collar-based accelerometer data from five hyenas, we generated a complete record of activity patterns over more than one month. We used these continuous behavioural sequences to investigate how past activity, individual idiosyncrasies, and social synchronization influence hyena activity patterns. We found that hyenas exhibit characteristic crepuscular-nocturnal daily activity patterns. Time spent active was independent of activity level on previous days, suggesting that hyenas do not show activity compensation. We also found limited evidence for an effect of individual identity on activity, and showed that pairs of hyenas who synchronized their activity patterns must have spent more time together. This study sheds light on the patterns and drivers of activity in spotted hyena societies, and also provides a useful tool for quantifying behavioural sequences from accelerometer data.
  • Article
    Advances in remote sensing of emperor penguins: First multi-year time series documenting trends in the global population
    (The Royal Society, 2024-03-13) LaRue, Michelle ; Iles, David T. ; Labrousse, Sara ; Fretwell, Peter T. ; Ortega, David ; Devane, Eileen ; Horstmann, Isabella ; Viollat, Lise ; Foster-Dyer, Rose ; Le Bohec, Celine ; Zitterbart, Daniel ; Houstin, Aymeric ; Richter, Sebastian ; Winterl, Alexander ; Wienecke, Barbara ; Salas, Leo ; Nixon, Monique ; Barbraud, Christophe ; Kooyman, Gerald L. ; Ponganis, Paul J. ; Ainley, David G. ; Trathan, Philip ; Jenouvrier, Stephanie
    Like many polar animals, emperor penguin populations are challenging to monitor because of the species' life history and remoteness. Consequently, it has been difficult to establish its global status, a subject important to resolve as polar environments change. To advance our understanding of emperor penguins, we combined remote sensing, validation surveys and using Bayesian modelling, we estimated a comprehensive population trajectory over a recent 10-year period, encompassing the entirety of the species’ range. Reported as indices of abundance, our study indicates with 81% probability that there were fewer adult emperor penguins in 2018 than in 2009, with a posterior median decrease of 9.6% (95% credible interval (CI) −26.4% to +9.4%). The global population trend was −1.3% per year over this period (95% CI = −3.3% to +1.0%) and declines probably occurred in four of eight fast ice regions, irrespective of habitat conditions. Thus far, explanations have yet to be identified regarding trends, especially as we observed an apparent population uptick toward the end of time series. Our work potentially establishes a framework for monitoring other Antarctic coastal species detectable by satellite, while promoting a need for research to better understand factors driving biotic changes in the Southern Ocean ecosystem.
  • Presentation
    Advancing Open Source, Linked Data Solutions for Cross-Repository Discovery and Collaboration
    ( 2016-05) Raymond, Lisa ; Mickle, Audrey
    The MBLWHOI Library collaborated in multi-year NSF EarthCube funded projects, applying semantic technologies to enable knowledge discovery, sharing, and integration
  • Presentation
    Adventures in Minimal Marc and Bulkimport
    ( 2009-10-12T17:50:22Z) Rioux, Margaret A.
    Method for adding data, such as OCLC numbers or URLs to bibliographic records in an Ex Libris Voyager library system using minimal Marc records and Bulkimport
  • Article
    Aggregation of slightly buoyant microplastics in 3D vortex flows
    (American Geophysical Union, 2024-01-17) Rypina, Irina I. ; Pratt, Lawrence J. ; Dotzel, Michael
    Although the movement and aggregation of microplastics at the ocean surface have been well studied, less is known about the subsurface. Within the Maxey–Riley framework governing the movement of small, rigid spheres with high drag in fluid, the aggregation of buoyant particles is encouraged in vorticity-dominated regions. We explore this process in an idealized model that is qualitatively reminiscent of a 3D eddy with an azimuthal and overturning circulation. In the axially symmetric state, buoyant spherical particles that do not accumulate at the top boundary are attracted to a loop consisting of periodic orbits. Such a loop exists when drag on the particle is sufficiently strong. For small, slightly buoyant particles, this loop is located close to the periodic fluid parcel trajectory. If the symmetric flow is perturbed by a symmetry-breaking disturbance, additional attractors for small, rigid, slightly buoyant particles may arise near periodic orbits of fluid parcels within the resonance zones created by the disturbance. Disturbances with periodic or quasiperiodic time dependence may produce even more attractors, with a shape and location that recurs periodically. However, not all such loops attract, and rigid particles released in the vicinity of one loop may instead be attracted to a nearby attractor. Examples are presented along with mappings of the respective basins of attraction.
  • Article
    Allochrony is shaped by foraging niche segregation rather than adaptation to the windscape in long-ranging seabirds
    (BMC, 2024-04-02) Ventura, Francesco ; Granadeiro, Jose Pedro ; Catry, Paulo ; Gjerdrum, Carina ; De Pascalis, Federico ; Viveiros, Filipe ; Silva, Isamberto ; Menezes, Dilia ; Paiva, Vitor H. ; Silva, Monica C.
    Ecological segregation allows populations to reduce competition and coexist in sympatry. Using as model organisms two closely related gadfly petrels endemic to the Madeira archipelago and breeding with a two month allochrony, we investigated how movement and foraging preferences shape ecological segregation in sympatric species. We tested the hypothesis that the breeding allochrony is underpinned by foraging niche segregation. Additionally, we investigated whether our data supported the hypothesis that allochrony is driven by species-specific adaptations to different windscapes.
  • Article
    The Alvin Bibliography: from paper to on-line access
    (IAMSLIC, 1994) Berteaux, Susan S.
  • Article
    An example of accelerated changes in current and future ecosystem trajectories: unexpected rapid transitions in salt marsh vegetation forced by sea level rise
    (Elsevier, 2024-01-13) Valiela, Ivan ; Lloret, Javier ; Chenoweth, Kelsey ; Wang, Yuyang
    Accelerated sea level rise has forced greater changes in the vegetation of Great Sippewissett Marsh during the recent few years than were recorded in the previous half century. Even with conservative estimates of sea level rise, accretion in the salt marsh platform would be insufficient to match submergence, but in addition, a new set of cascading changes seem to be accelerating the transformation of the Great Sippewissett Marsh vegetation mosaic, including conversion of cover by short to taller Spartina alterniflora, leading to lowering below-ground biomass and weakening of sediment columns, while the greater above-ground biomass increases wrack that strands and smothers high marsh vegetation. In addition, a salt-tolerant variant of Phragmites australis has begun to aggressively invade upper elevations of Great Sippewissett Marsh, replacing high marsh species cover, as well as dominating adjoining low-lying areas that might have allowed salt marsh landward migration as sea level effects increase. In many parts of Great Sippewissett Marsh, area of high marsh is steadily diminishing, taller S. alterniflora has extended upwards in areas previously supporting high marsh species, but its landward progress is now impeded by competition and shading by the phalanx of P. australis that has extended down-slope. The vegetation gradient in Great Sippewissett Marsh—and other salt marshes—is in rapid transition, and its decadal future seems in doubt.
  • Article
    An improved ensemble of land-surface air temperatures since 1880 using revised pair-wise homogenization algorithms accounting for autocorrelation
    (American Meteorological Society, 2024-03-12) Chan, Duo ; Gebbie, Geoffrey A. ; Huybers, Peter
    Land surface air temperatures (LSAT) inferred from weather station data differ among major research groups. The estimate by NOAA’s monthly Global Historical Climatology Network (GHCNm) averages 0.02°C cooler between 1880 and 1940 than Berkeley Earth’s and 0.14°C cooler than the Climate Research Unit estimates. Such systematic offsets can arise from differences in how poorly documented changes in measurement characteristics are detected and adjusted. Building upon an existing pairwise homogenization algorithm used in generating the fourth version of NOAA’s GHCNm(V4), PHA0, we propose two revisions to account for autocorrelation in climate variables. One version, PHA1, makes minimal modification to PHA0 by extending the threshold used in breakpoint detection to be a function of LSAT autocorrelation. The other version, PHA2, uses penalized likelihood to detect breakpoints through optimizing a model-selection problem globally. To facilitate efficient optimization for series with more than 1000 time steps, a multiparent genetic algorithm is proposed for PHA2. Tests on synthetic data generated by adding breakpoints to CMIP6 simulations and realizations from a Gaussian process indicate that PHA1 and PHA2 both similarly outperform PHA0 in recovering accurate climatic trends. Applied to unhomogenized GHCNmV4, both revised algorithms detect breakpoints that correspond with available station metadata. Uncertainties are estimated by perturbing algorithmic parameters, and an ensemble is constructed by pooling 50 PHA1- and 50 PHA2-based members. The continental-mean warming in this new ensemble is consistent with that of Berkeley Earth, despite using different homogenization approaches. Relative to unhomogenized data, our homogenization increases the 1880–2022 trend by 0.16 [0.12, 0.19]°C century−1 (95% confidence interval), leading to continental-mean warming of 1.65 [1.62, 1.69]°C over 2010–22 relative to 1880–1900.