Ecosystems Center
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The Ecosystems Center carries out research in ecosystems that range from the Arctic to the Antarctic, from Brazil to Martha’s Vineyard. In the Alaskan Arctic, scientists study the effect of warmer temperatures on tundra, stream and lake ecosystems. On the Arctic rivers of Eurasia, they measure how freshwater discharge is changing as the climate warms. On the western Antarctic peninsula, research focuses on the responses of the marine coastal ecosystem to rapid climate warming. In the western Amazon in Brazil, researchers assess how much the clearing of tropical forests will change the amount of greenhouse gas released into the atmosphere, while on the island of Martha’s Vineyard, scientists used controlled burns to restore coastal ecosystems. In central Massachusetts and in Abisko, Sweden, soil warming experiments are conducted to assess the forest’s response to climate warming. In northeastern Massachusetts, scientists study how changes in rural land use and urban development affect the flow of nutrients and organic matter into New England estuaries. In Boston Harbor, they measure the transfer of nitrogen from sediments to the water column as the harbor recovers from decades of sewage addition.
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Browsing Ecosystems Center by Subject "Stable isotopes"
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PreprintAmazon deforestation alters small stream structure, nitrogen biogeochemistry and connectivity to larger rivers( 2010-08-29) Deegan, Linda A. ; Neill, Christopher ; Haupert, Christie L. ; Ballester, M. Victoria R. ; Krusche, Alex V. ; Victoria, Reynaldo L. ; Thomas, Suzanne M. ; de Moor, EmilyHuman activities that modify land cover can alter the structure and biogeochemistry of small streams but these effects are poorly known over large regions of the humid tropics where rates of forest clearing are high. We examined how conversion of Amazon lowland tropical forest to cattle pasture influenced the physical and chemical structure, organic matter stocks and N cycling of small streams. We combined a regional ground survey of small streams with an intensive study of nutrient cycling using 15N additions in three representative streams: a second-order forest stream, a second-order pasture stream and a third-order pasture stream that were within several km of each other and on similar soils and landscape positions. Replacement of forest with pasture decreased stream habitat complexity by changing streams from run and pool channels with forest leaf detritus (50% cover) to grass-filled (63% cover) channel with runs of slow-moving water. In the survey, pasture streams consistently had lower concentrations of dissolved oxygen and nitrate (NO3-) compared with similar-sized forest streams. Stable isotope additions revealed that second-order pasture stream had a shorter NH4+ uptake length, higher uptake rates into organic matter components and a shorter 15NH4+ residence time than the second-order forest stream or the third-order pasture stream. Nitrification was significant in the forest stream (19% of the added 15NH4+) but not in the second-order pasture (0%) or third-order (6%) pasture stream. The forest stream retained 7% of added 15N in organic matter compartments and exported 53% (15NH4+ =34%; 15NO3- = 19%). In contrast, the second-order pasture stream retained 75% of added 15N, predominantly in grasses (69%) and exported only 4% as 15NH4+. The fate of tracer 15N in the third-order pasture stream more closely resembled that in the forest stream, with 5% of added N retained and 26% exported (15NH4+ = 9%; 15NO3- = 6%). These findings indicate that the widespread infilling by grass in small streams in areas deforested for pasture greatly increases the retention of inorganic N in the first- and second-order streams, which make up roughly three-fourths of total stream channel length in Amazon basin watersheds. The importance of this phenomenon and its effect on N transport to larger rivers across the larger areas of the Amazon Basin will depend on better evaluation of both the extent and the scale at which stream infilling by grass occurs, but our analysis suggests the phenomenon is widespread.
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PreprintThe application of δ18O and δD for understanding water pools and fluxes in a Typha Marsh( 2011-05) Bijoor, Neeta S. ; Pataki, Diane E. ; Rocha, Adrian V. ; Goulden, Michael L.The δ18O and δD composition of water pools (leaf, root, standing water, and soil water) and fluxes (transpiration, evaporation) were used to understand ecohydrological processes in a managed Typha latifolia L. freshwater marsh. We observed isotopic steady state transpiration and deep rooting in Typha. The isotopic mass balance of marsh standing water showed that evaporation accounted for 3% of the total water loss, transpiration accounted for 17%, and subsurface drainage accounted for the majority, 80%. There was a vertical gradient in water vapor content and isotopic composition within and above the canopy sufficient for constructing an isotopic mass balance of water vapor during some sampling periods. During these periods, the proportion of transpiration in evapotranspiration (T/ET) was between 56 ± 17% to 96 ± 67%, and the estimated error was relatively high (>37%) due to non-local, background sources in vapor. Independent estimates of T/ET using eddy covariance measurements yielded similar mean values during the Typha growing season. The various T/ET estimates agreed that transpiration was the dominant source of marsh vapor loss in the growing season. The isotopic mass balance of water vapor yielded reasonable results, but the mass balance of standing water provided more definitive estimates of water losses.
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PreprintEffects of regular salt marsh haying on marsh plants, algae, invertebrates and birds at Plum Island Sound, Massachusetts( 2008-10) Buchsbaum, Robert N. ; Deegan, Linda A. ; Horowitz, Julie ; Garritt, Robert H. ; Giblin, Anne E. ; Ludlam, John P. ; Shull, David H.The haying of salt marshes, a traditional activity since colonial times in New England, still occurs in about 400 ha of marsh in the Plum Island Sound estuary in northeastern Massachusetts. We took advantage of this haying activity to investigate how the periodic large-scale removal of aboveground biomass affects a number of marsh processes. Hayed marshes were no different from adjacent reference marshes in plant species density (species per area) and end-of-year aboveground biomass, but did differ in vegetation composition. Spartina patens was more abundant in hayed marshes than S. alterniflora, and the reverse was true in reference marshes. The differences in relative covers of these plant species were not associated with any differences between hayed and reference marshes in the elevations of the marsh platform. Instead it suggested that S. patens was more tolerant of haying than S. alterniflora. S. patens had higher stem densities in hayed marshes than it did in reference marshes, suggesting that periodic cutting stimulated tillering of this species. Although we predicted that haying would stimulate benthic chlorophyll production by opening up the canopy, we found differences to be inconsistent, possibly due to the relatively rapid regrowth of S. patens and to grazing by invertebrates on the algae. The pulmonate snail, Melampus bidendatus was depleted in its δ13C content in the hayed marsh compared to the reference, suggesting a diet shift to benthic algae in hayed marshes. The stable isotope ratios of a number of other consumer species were not affected by haying activity. Migratory shorebirds cue in to recently hayed marshes and may contribute to short term declines in some invertebrate species, however the number of taxa per unit area of marsh surface invertebrates and their overall abundances were unaffected by haying over the long term. Haying had no impact on nutrient concentrations in creeks just downstream from hayed plots, but the sediments of hayed marshes were lower in total N and P compared to references. In sum, haying appeared to affect plant species composition but had only short-term affects on consumer organisms. This contrasts with many grassland ecosystems, where an intermediate level of disturbance, such as by grazing, increases species diversity and may stimulate productivity. From a management perspective, periodic mowing could be a way to maintain S. patens habitats and the suite of species with which they are associated.
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PreprintExperimental assessment of the macroalgae Ascophyllum nodosum and Fucus vesiculosus for monitoring N sources at different time-scales using stable isotope composition( 2015-01) Viana, Ines G. ; Bode, Antonio ; Bartholomew, Megan ; Valiela, IvanStable isotope composition of brown macroalgae has been widely used to monitor N loading during the last decades but some of the required assumptions when using them to detect anthropogenic inputs remain untested. In this study several experiments were run with two key species, A. nodosum and F. vesiculosus, to determine internal nitrogen isotope dynamics. First, the equilibration of the isotopic values of the different parts of the thallus of these species was tested by growing them under different water sources. Then, nitrate uptake capacity and N transport along the frond were tested by 15N enrichment experiments. The results indicate that although the growing tips had the highest uptake rates, older parts of the frond of both species have the capacity to incorporate N at low rates. No evidence of N transport along the thallus, from the tip to the basal segment of the frond or the converse was found. These results show that the growing tips of these macroalgae can be used to monitor N loadings at time scales from weeks (F. vesiculosus) to months (A. nodosum). The use of non-growing parts of the thallus to do retrospective studies cannot be recommended because of their measurable exchange of N with the surrounding water.
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PreprintMethods for measuring denitrification : diverse approaches to a difficult problem( 2005-07-15) Groffman, Peter M. ; Altabet, Mark A. ; Bohlke, John K. ; Butterbach-Bahl, Klaus ; David, Mark B. ; Firestone, Mary K. ; Giblin, Anne E. ; Kana, Todd M. ; Nielsen, Lars Peter ; Voytek, Mary A.Denitrification, the reduction of the nitrogen (N) oxides, nitrate (NO3-) and nitrite (NO2-), to the gases nitric oxide (NO), nitrous oxide (N2O) and dinitrogen (N2), is important to primary production, water quality and the chemistry and physics of the atmosphere at ecosystem, landscape, regional and global scales. Unfortunately, this process is very difficult to measure, and existing methods are problematic for different reasons in different places at different times. In this paper, we review the major approaches that have been taken to measure denitrification in terrestrial and aquatic environments and discuss the strengths, weaknesses and future prospects for the different methods. Methodological approaches covered include; 1) acetylene-based methods, 2) 15N tracers, 3) direct N2 quantification, 4) N2/Ar ratio quantification, 5) mass balance approaches, 6) stoichiometric approaches, 7) methods based on stable isotopes, 8) in situ gradients with atmospheric environmental tracers and 9) molecular approaches. Our review makes it clear that the prospects for improved quantification of denitrification vary greatly in different environments and at different scales. While current methodology allows for the production of accurate estimates of denitrification at scales relevant to water and air quality and ecosystem fertility questions in some systems (e.g., aquatic sediments, well defined aquifers), methodology for other systems, especially upland terrestrial areas, still needs development. Comparison of mass balance and stoichiometric approaches that constrain estimates of denitrification at large scales with point measurements (made using multiple methods), in multiple systems, is likely to propel more improvement in denitrification methods over the next few years.
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ArticleNitrate is an important nitrogen source for Arctic tundra plants(National Academy of Sciences, 2018-03-27) Liu, Xue-Yan ; Koba, Keisuke ; Koyama, Lina A. ; Hobbie, Sarah E. ; Weiss, Marissa S. ; Inagaki, Yoshiyuki ; Shaver, Gaius R. ; Giblin, Anne E. ; Hobara, Satoru ; Nadelhoffer, Knute J. ; Sommerkorn, Martin ; Rastetter, Edward B. ; Kling, George W. ; Laundre, James A. ; Yano, Yuriko ; Makabe, Akiko ; Yano, Midori ; Liu, Cong-QiangPlant nitrogen (N) use is a key component of the N cycle in terrestrial ecosystems. The supply of N to plants affects community species composition and ecosystem processes such as photosynthesis and carbon (C) accumulation. However, the availabilities and relative importance of different N forms to plants are not well understood. While nitrate (NO3−) is a major N form used by plants worldwide, it is discounted as a N source for Arctic tundra plants because of extremely low NO3− concentrations in Arctic tundra soils, undetectable soil nitrification, and plant-tissue NO3− that is typically below detection limits. Here we reexamine NO3− use by tundra plants using a sensitive denitrifier method to analyze plant-tissue NO3−. Soil-derived NO3− was detected in tundra plant tissues, and tundra plants took up soil NO3− at comparable rates to plants from relatively NO3−-rich ecosystems in other biomes. Nitrate assimilation determined by 15N enrichments of leaf NO3− relative to soil NO3− accounted for 4 to 52% (as estimated by a Bayesian isotope-mixing model) of species-specific total leaf N of Alaskan tundra plants. Our finding that in situ soil NO3− availability for tundra plants is high has important implications for Arctic ecosystems, not only in determining species compositions, but also in determining the loss of N from soils via leaching and denitrification. Plant N uptake and soil N losses can strongly influence C uptake and accumulation in tundra soils. Accordingly, this evidence of NO3− availability in tundra soils is crucial for predicting C storage in tundra.
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ArticleSalt marsh ecosystem biogeochemical responses to nutrient enrichment : a paired 15N tracer study(Ecological Society of America, 2009-09) Drake, Deanne C. ; Peterson, Bruce J. ; Galvan, Kari A. ; Deegan, Linda A. ; Hopkinson, Charles S. ; Johnson, J. Michael ; Koop-Jakobsen, Ketil ; LeMay, Lynsey E. ; Picard, ChristianWe compared processing and fate of dissolved NO3− in two New England salt marsh ecosystems, one receiving natural flood tide concentrations of 1–4 μmol NO3−/L and the other receiving experimentally fertilized flood tides containing 70–100 μmol NO3−/L. We conducted simultaneous 15NO3− (isotope) tracer additions from 23 to 28 July 2005 in the reference (8.4 ha) and fertilized (12.4 ha) systems to compare N dynamics and fate. Two full tidal cycles were intensively studied during the paired tracer additions. Resulting mass balances showed that essentially 100% (0.48–0.61 mol NO3-N·ha−1·h−1) of incoming NO3− was assimilated, dissimilated, sorbed, or sedimented (processed) within a few hours in the reference system when NO3− concentrations were 1.3–1.8 μmol/L. In contrast, only 50–60% of incoming NO3− was processed in the fertilized system when NO3− concentrations were 84–96 μmol/L; the remainder was exported in ebb tidewater. Gross NO3− processing was 40 times higher in the fertilized system at 19.34–24.67 mol NO3-N·ha−1·h−1. Dissimilatory nitrate reduction to ammonium was evident in both systems during the first 48 h of the tracer additions but <1% of incoming 15NO3− was exported as 15NH4+. Nitrification rates calculated by 15NO3− dilution were 6.05 and 4.46 mol·ha−1·h−1 in the fertilized system but could not be accurately calculated in the reference system due to rapid (<4 h) NO3− turnover. Over the five-day paired tracer addition, sediments sequestered a small fraction of incoming NO3−, although the efficiency of sequestration was 3.8% in the reference system and 0.7% in the fertilized system. Gross sediment N sequestration rates were similar at 13.5 and 12.6 mol·ha−1·d−1, respectively. Macrophyte NO3− uptake efficiency, based on tracer incorporation in aboveground tissues, was considerably higher in the reference system (16.8%) than the fertilized system (2.6%), although bulk uptake of NO3− by plants was lower in the reference system (1.75 mol NO3−·ha−1·d−1) than the fertilized system (10 mol NO3−·ha−1·d−1). Nitrogen processing efficiency decreased with NO3− load in all pools, suggesting that the nutrient processing capacity of the marsh ecosystem was exceeded in the fertilized marsh.
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PreprintA stable isotope simulator that can be coupled to existing mass balance models( 2005-01-07) Rastetter, Edward B. ; Kwiatkowski, Bonnie L. ; McKane, Robert B.To facilitate the simulation of isotope dynamics in ecosystems, we developed software to model changes in the isotopic signatures of the stocks of an element using the output from any parent model that specifies the stocks and flux rates of that element based on a mass balance approach. The software alleviates the need to recode the parent model to incorporate isotopes. This parent model can be a simple mass balance spreadsheet of the system. The isotopic simulations use a linear, donor-controlled approximation of the fluxes in the parent model, which are updated for each time step. These approximations are based on the output of the parent model, so no modifications to the parent model are required. However, all fluxes provided to the simulator must be gross fluxes, and the user must provide the initial isotopic signature for all stocks, the fractionation associated with each flux, and the isotopic signature of any flux originating from outside the system. We illustrate the use of the simulator with two examples. The first is based on a model of the carbon and nitrogen mass balance in an eight-species food web. We examine the consequences of using the steady-state assumption implicit in multi-source mixing models often used to map food webs based on 13C and 15N. We also use the simulator to analyze a pulse chase 15N-labeling experiment based on a spreadsheet model of the nitrogen cycle at the Harvard Forest Long Term Ecological Research site. We examine the constraints on net vs. gross N mineralization that are necessary to match the observed changes in the isotopic signatures of the forest N stocks.
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ArticleVariability in the carbon isotopic composition of foliage carbon pools (soluble carbohydrates, waxes) and respiration fluxes in southeastern U.S. pine forests(American Geophysical Union, 2012-04-19) Mortazavi, Behzad ; Conte, Maureen H. ; Chanton, Jeffrey P. ; Weber, John C. ; Martin, Timothy A. ; Cropper, Wendell P.We measured the δ13C of assimilated carbon (foliage organic matter (δCOM), soluble carbohydrates (δCSC), and waxes (δCW)) and respiratory carbon (foliage (δCFR), soil (δCSR) and ecosystem 13CO2 (δCER)) for two years at adjacent ecosystems in the southeastern U.S.: a regenerated 32 m tall mature Pinus palustris forest, and a mid-rotation 13 m tall Pinus elliottii stand. Carbon pools and foliage respiration in P. palustris were isotopically enriched by 2‰ relative to P. elliottii. Despite this enrichment, mean δCER values of the two sites were nearly identical. No temporal trends were apparent in δCSC, δCFR, δCSR and δCER. In contrast, δCOM and δCW at both sites declined by approximately 2‰ over the study. This appears to reflect the adjustment in the δ13C of carbon storage reserves used for biosynthesis as the trees recovered from a severe drought prior to our study. Unexpectedly, the rate of δ13C decrease in the secondary C32–36 n-alkanoic acid wax molecular cluster was twice that observed for δCOM and the predominant C22–26 compound cluster, and provides new evidence for parallel but separate wax chain elongation systems utilizing different carbon precursor pools in these species. δCFR and δCER were consistently enriched relative to assimilated carbon but, in contrast to previous studies, showed limited variations in response to changes in vapor pressure deficit (D). This limited variability in respiratory fluxes and δCSC may be due to the shallow water table as well as the deep taproots of pines, which limit fluctuations in photosynthetic discrimination arising from changes in D.