Microbial eukaryotic focused metatranscriptome data from seawater collected in coastal California in May of 2015

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Date
2020-05-11
Authors
Caron, David
 Hu, Sarah K
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Person
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dataset-745518_microbial-eukaryotic-focused-metatranscriptome-data__v2.tsv (11.8 KB)
dataset-745518_microbial-eukaryotic-focused-metatranscriptome-data__v2_README.txt (110 B)
Dataset_description.pdf (59.89 KB)
NOAA_ISO19115-2.xml (64.23 KB)
SPOT_metatranscriptome-bcodmo_v1.zip (810.06 KB)
Alternative Title
Citable URI
https://hdl.handle.net/1912/25760
As Published
http://lod.bco-dmo.org/id/dataset/745518
 https://doi.org/10.26008/1912/bco-dmo.745518.2
Date Created
2018-10-15
Location
San Pedro Channel off the coast of Los Angeles
 westlimit: -118.4; southlimit: 33.55; eastlimit: -118.4; northlimit: 33.55
DOI
10.26008/1912/bco-dmo.745518.2
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Keywords
Microbial ecology
 Microbial eukaryotes
 Metatranscriptomics
 Protistan trophic strategies
 Microbial eukaryotic metatranscriptomics
Abstract
Seawater was collected via Niskin bottles mounted with a CTD from the San Pedro Ocean Time-series (SPOT) station off the coast of Southern California near the surface (5 m), 150 and 890 m, in late May 2015. Raw sequence data was generated as part of a metatranscriptome study targeting the protistan community. Raw sequences are available at the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) database (SRA Study ID: SRP110974, BioProject: PRJNA391503). Sequences for BioProject PRJNA608423 will be available at NCBI on Jan 1st, 2021. These data were published in Hu et al. (2018). For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/745518
Description
Dataset: Microbial eukaryotic focused metatranscriptome data
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Citation
Caron, D., & Hu, S. (2020). Microbial eukaryotic focused metatranscriptome data from seawater collected in coastal California in May of 2015 (Version 2) [Data set]. Biological and Chemical Oceanography Data Management Office (BCO-DMO). https://doi.org/10.26008/1912/BCO-DMO.745518.2
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Biological and Chemical Oceanography Data Management Office Data Sets
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