Microbial eukaryotic focused metatranscriptome data from seawater collected in coastal California in May of 2015

Thumbnail Image
Date
2020-05-11
Authors
Caron, David
 Hu, Sarah K
Linked Authors
Person
Person
Files
dataset-745518_microbial-eukaryotic-focused-metatranscriptome-data__v2.tsv (11.8 KB)
dataset-745518_microbial-eukaryotic-focused-metatranscriptome-data__v2_README.txt (110 B)
Dataset_description.pdf (59.89 KB)
NOAA_ISO19115-2.xml (64.23 KB)
SPOT_metatranscriptome-bcodmo_v1.zip (810.06 KB)
Alternative Title
Citable URI
https://hdl.handle.net/1912/25760
As Published
http://lod.bco-dmo.org/id/dataset/745518
 https://doi.org/10.26008/1912/bco-dmo.745518.2
Date Created
2018-10-15
Location
San Pedro Channel off the coast of Los Angeles
 westlimit: -118.4; southlimit: 33.55; eastlimit: -118.4; northlimit: 33.55
DOI
10.26008/1912/bco-dmo.745518.2
Replaced By
Keywords
Microbial ecology
 Microbial eukaryotes
 Metatranscriptomics
 Protistan trophic strategies
 Microbial eukaryotic metatranscriptomics
Abstract
Seawater was collected via Niskin bottles mounted with a CTD from the San Pedro Ocean Time-series (SPOT) station off the coast of Southern California near the surface (5 m), 150 and 890 m, in late May 2015. Raw sequence data was generated as part of a metatranscriptome study targeting the protistan community. Raw sequences are available at the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) database (SRA Study ID: SRP110974, BioProject: PRJNA391503). Sequences for BioProject PRJNA608423 will be available at NCBI on Jan 1st, 2021. These data were published in Hu et al. (2018). For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/745518
Description
Dataset: Microbial eukaryotic focused metatranscriptome data
Embargo Date
Citation
Caron, D., & Hu, S. (2020). Microbial eukaryotic focused metatranscriptome data from seawater collected in coastal California in May of 2015 (Version 2) [Data set]. Biological and Chemical Oceanography Data Management Office (BCO-DMO). https://doi.org/10.26008/1912/BCO-DMO.745518.2
Cruises
Cruise ID
Cruise DOI
Vessel Name
Collections
Biological and Chemical Oceanography Data Management Office Data Sets
Except where otherwise noted, this item's license is described as Creative Commons Attribution 4.0