FASTA file of sequences in Trichodesmium field metaproteomes mapped to a Trichodesmium metagenome plus cyanoGEBA species genomes from samples collected in the Atlantic and Pacific Ocean between 2000 and 2018

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Date
2020-04-30
Authors
Saito, Mak A.
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trimmed_fasta_trichoWT.fasta (1.01 MB)
Dataset_description.pdf (62.27 KB)
NOAA_ISO19115-2.xml (71.46 KB)
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Citable URI
https://hdl.handle.net/1912/25722
As Published
http://lod.bco-dmo.org/id/dataset/787181
 https://doi.org/10.26008/1912/bco-dmo.787181.1
Date Created
2020-01-14
Location
Tropical Atlantic
 westlimit: -158; southlimit: 0.17; eastlimit: -21.59; northlimit: 23.22
DOI
10.26008/1912/bco-dmo.787181.1
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Keywords
Trichodesmium
 Metaproteomics
Abstract
FASTA file of sequences in Trichodesmium field metaproteomes analyzed by 2D LC-MS/MS mapped to a Trichodesmium metagenome (IMG ID 2821474806) plus cyanoGEBA species genomes (Shih et al, 2013). Samples were collected in North Atlantic surface waters, at station BATS (Bermuda Atlantic Time-series Study), and station ALOHA (A Long-Term Oligotrophic Habitat Assessment) between 2000 and 2018. Related datasets: Trichodesmium field metaproteomes - peptide spectral counts: https://www.bco-dmo.org/dataset/787168 Trichodesmium field metaproteomes - protein spectral counts: https://www.bco-dmo.org/dataset/787147 Trichodesmium sample provenance: https://www.bco-dmo.org/dataset/787093 - Sample provenance file, which includes sample locations, filter sizes For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/787181
Description
Dataset: Trichodesmium field metaproteomes - sequence fasta
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Citation
Saito, M. (2020). FASTA file of sequences in Trichodesmium field metaproteomes mapped to a Trichodesmium metagenome plus cyanoGEBA species genomes from samples collected in the Atlantic and Pacific Ocean between 2000 and 2018 (Version 1) [Data set]. Biological and Chemical Oceanography Data Management Office (BCO-DMO). https://doi.org/10.26008/1912/BCO-DMO.787181.1
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Biological and Chemical Oceanography Data Management Office Data Sets
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