Metadata for longread sequencing of Carcinus maenas collected from Buzzards Bay, Massachusetts from May 2022 to Aug 2022

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Date
2025-02-11
Authors
Tepolt, Carolyn
Linked Authors
Files
949666_v1_longread_seq_metadata.csv (796 B)
Dataset_description.pdf (69.78 KB)
NOAA_ISO19115-2.xml (54.37 KB)
BCO-DMO_Cas9-probe-seqs_NSF-1850996.csv (2.05 KB)
metadata_dspace.xml (150 B)
Alternative Title
Citable URI
https://hdl.handle.net/1912/71389
As Published
http://lod.bco-dmo.org/id/dataset/949666
 https://doi.org/10.26008/1912/bco-dmo.949666.1
Date Created
2025-01-29
Location
North American west coast: 36 N to 51 N. Emphasis on the Salish Sea
 westlimit: -71.201019; southlimit: 41.30566; eastlimit: -70.589905; northlimit: 41.775408
DOI
10.26008/1912/bco-dmo.949666.1
Related Materials
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Keywords
Marine invasion
 Carcinus maenas
 genomics
Abstract
This project explores genomic changes in the invasive European green crab (Carcinus maenas), including at a putative inversion polymorphism. To begin to explore structural variation without a reference genome, we conducted semi-targeted longread sequencing of the C. maenas genome using MinION sequencing. This dataset includes individual metadata for 6 raw MinION reads, archived at GenBank's SRA under BioProject PRJNA1171011. This sequencing was conducted using crabs from Massachusetts waters. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/949666
Description
Dataset: Metadata for longread sequencing of Carcinus maenas
Embargo Date
Citation
Cruises
Cruise ID
Cruise DOI
Vessel Name
Collections
Biological and Chemical Oceanography Data Management Office Data Sets
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