Amplicon sequence variants (ASVs) and taxonomy of Pseudo-nitzschia spp. from Narragansett Bay in Rhode Island, USA and the Northeast U.S. Shelf (NES-LTER transect) from 2018-2023
Amplicon sequence variants (ASVs) and taxonomy of Pseudo-nitzschia spp. from Narragansett Bay in Rhode Island, USA and the Northeast U.S. Shelf (NES-LTER transect) from 2018-2023
Date
2024-10-14
Authors
Roche, Katherine M.
Church, Isabella
Sterling, Alexa
Rynearson, Tatiana A.
Bertin, Matthew
Kim, Andrew
Kirk, Riley
Jenkins, Bethany D.
Church, Isabella
Sterling, Alexa
Rynearson, Tatiana A.
Bertin, Matthew
Kim, Andrew
Kirk, Riley
Jenkins, Bethany D.
Linked Authors
Alternative Title
Citable URI
Date Created
2024-10-11
Location
Northeast U.S. Continental Shelf Large Marine Ecosystem: 35.2019 to 46.0906 latitude, -77.3492 to -63.3608 longitude
Narragansett Bay, Rhode Island
westlimit: -71.42; southlimit: 39.93; eastlimit: -70.77; northlimit: 41.57
Narragansett Bay, Rhode Island
westlimit: -71.42; southlimit: 39.93; eastlimit: -70.77; northlimit: 41.57
DOI
10.26008/1912/bco-dmo.936849.1
Related Materials
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Keywords
harmful algal blooms
domoic acid
Pseudo-nitzschia
time series
diatoms
domoic acid
Pseudo-nitzschia
time series
diatoms
Abstract
This dataset includes amplicon sequence variants (ASVs) representing species of the harmful algal bloom diatom genus Pseudo-nitzschia that were sampled from various sites in Narragansett Bay, Rhode Island, including the Narragansett Bay Long Term Plankton Time Series site, and various stations along the Northeast U.S. Shelf Long Term Ecological Research program transect. These data correspond to an analysis of Pseudo-nitzschia species composition and domoic acid toxin production during winters and summers from 2018-2023 in Narragansett Bay and the Northeast U.S. Shelf, which was prepared for submission to Harmful Algae (Roche, et al.). ASVs are also available under NCBI GenBank Accession Numbers PQ002243 - PQ002350 and MW447658 - MW447770 and raw sequencing data is available under NCBI Sequence Read Archive Accession numbers associated with BioSample accessions SAMN42123204 - 42123391 within BioProject PRJNA1129077.
For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/936849
Description
Dataset: Amplicon sequence variants (ASVs) and taxonomy of Pseudo-nitzschia spp.
Embargo Date
Citation
Roche, K. M., Church, I., Sterling, A., Rynearson, T. A., Bertin, M., Kim, A., Kirk, R., & Jenkins, B. D. (2024). Amplicon sequence variants (ASVs) and taxonomy of Pseudo-nitzschia spp. from Narragansett Bay in Rhode Island, USA and the Northeast U.S. Shelf (NES-LTER transect) from 2018-2023 (Version 1) [Data set]. Biological and Chemical Oceanography Data Management Office (BCO-DMO). https://doi.org/10.26008/1912/BCO-DMO.936849.1