Young Benjamin

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Young
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Benjamin
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  • Article
    Estimating the impact of seep methane oxidation on ocean pH and dissolved inorganic radiocarbon along the US Mid-Atlantic Bight
    (American Geophysical Union, 2020-12-23) Garcia-Tigreros, Fenix ; Leonte, Mihai ; Ruppel, Carolyn D. ; Ruiz-Angulo, Angel ; Joung, DongJoo ; Young, Benjamin ; Kessler, John D.
    Ongoing ocean warming can release methane (CH4) currently stored in ocean sediments as free gas and gas hydrates. Once dissolved in ocean waters, this CH4 can be oxidized to carbon dioxide (CO2). While it has been hypothesized that the CO2 produced from aerobic CH4 oxidation could enhance ocean acidification, a previous study conducted in Hudson Canyon shows that CH4 oxidation has a small short‐term influence on ocean pH and dissolved inorganic radiocarbon. Here we expand upon that investigation to assess the impact of widespread CH4 seepage on CO2 chemistry and possible accumulation of this carbon injection along 234 km of the U.S. Mid‐Atlantic Bight. Consistent with the estimates from Hudson Canyon, we demonstrate that a small fraction of ancient CH4‐derived carbon is being assimilated into the dissolved inorganic radiocarbon (mean fraction of 0.5 ± 0.4%). The areas with the highest fractions of ancient carbon coincide with elevated CH4 concentration and active gas seepage. This suggests that aerobic CH4 oxidation has a greater influence on the dissolved inorganic pool in areas where CH4 concentrations are locally elevated, instead of displaying a cumulative effect downcurrent from widespread groupings of CH4 seeps. A first‐order approximation of the input rate of ancient‐derived dissolved inorganic carbon (DIC) into the waters overlying the northern U.S. Mid‐Atlantic Bight further suggests that oxidation of ancient CH4‐derived carbon is not negligible on the global scale and could contribute to deepwater acidification over longer time scales.
  • Article
    Different disease inoculations cause common responses of the host immune system and prokaryotic component of the microbiome in Acropora palmata.
    (Public Library of Science, 2023-05-25) Young, Benjamin D. ; Rosales, Stephanie M. ; Enochs, Ian C. ; Kolodziej, Graham ; Formel, Nathan ; Moura, Amelia ; DAlonso, Gabrielle L. ; Traylor-Knowles, Nikki
    Reef-building corals contain a complex consortium of organisms, a holobiont, which responds dynamically to disease, making pathogen identification difficult. While coral transcriptomics and microbiome communities have previously been characterized, similarities and differences in their responses to different pathogenic sources has not yet been assessed. In this study, we inoculated four genets of the Caribbean branching coral Acropora palmata with a known coral pathogen (Serratia marcescens) and white band disease. We then characterized the coral’s transcriptomic and prokaryotic microbiomes’ (prokaryiome) responses to the disease inoculations, as well as how these responses were affected by a short-term heat stress prior to disease inoculation. We found strong commonality in both the transcriptomic and prokaryiomes responses, regardless of disease inoculation. Differences, however, were observed between inoculated corals that either remained healthy or developed active disease signs. Transcriptomic co-expression analysis identified that corals inoculated with disease increased gene expression of immune, wound healing, and fatty acid metabolic processes. Co-abundance analysis of the prokaryiome identified sets of both healthy-and-disease-state bacteria, while co-expression analysis of the prokaryiomes’ inferred metagenomic function revealed infected corals’ prokaryiomes shifted from free-living to biofilm states, as well as increasing metabolic processes. The short-term heat stress did not increase disease susceptibility for any of the four genets with any of the disease inoculations, and there was only a weak effect captured in the coral hosts’ transcriptomic and prokaryiomes response. Genet identity, however, was a major driver of the transcriptomic variance, primarily due to differences in baseline immune gene expression. Despite genotypic differences in baseline gene expression, we have identified a common response for components of the coral holobiont to different disease inoculations. This work has identified genes and prokaryiome members that can be focused on for future coral disease work, specifically, putative disease diagnostic tools.