Johnston
T. M. Shaun
Johnston
T. M. Shaun
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ArticleThe equatorial current system west of the Galapagos Islands during the 2014-16 El Niño as observed by underwater gliders(American Meteorological Society, 2020-12-21) Rudnick, Daniel L. ; Owens, W. Brechner ; Johnston, T. M. Shaun ; Karnauskas, Kristopher B. ; Jakoboski, Julie K. ; Todd, Robert E.The strong El Niño of 2014–16 was observed west of the Galápagos Islands through sustained deployment of underwater gliders. Three years of observations began in October 2013 and ended in October 2016, with observations at longitudes 93° and 95°W between latitudes 2°N and 2°S. In total, there were over 3000 glider-days of data, covering over 50 000 km with over 12 000 profiles. Coverage was superior closer to the Galápagos on 93°W, where gliders were equipped with sensors to measure velocity as well as temperature, salinity, and pressure. The repeated glider transects are analyzed to produce highly resolved mean sections and maps of observed variables as functions of time, latitude, and depth. The mean sections reveal the structure of the Equatorial Undercurrent (EUC), the South Equatorial Current, and the equatorial front. The mean fields are used to calculate potential vorticity Q and Richardson number Ri. Gradients in the mean are strong enough to make the sign of Q opposite to that of planetary vorticity and to have Ri near unity, suggestive of mixing. Temporal variability is dominated by the 2014–16 El Niño, with the arrival of depressed isopycnals documented in 2014 and 2015. Increases in eastward velocity advect anomalously salty water and are uncorrelated with warm temperatures and deep isopycnals. Thus, vertical advection is important to changes in heat, and horizontal advection is relevant to changes in salt. Implications of this work include possibilities for future research, model assessment and improvement, and sustained observations across the equatorial Pacific.
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ArticleDiagnosing frontal dynamics from observations using a variational approach(American Geophysical Union, 2022-09-30) Cutolo, Eugenio ; Pascual, Ananda ; Ruiz, Simón ; Johnston, T. M. Shaun ; Freilich, Mara ; Mahadevan, Amala ; Shcherbina, Andrey ; Poulain, Pierre‐Marie ; Ozgokmen, Tamay ; Centurioni, Luca R. ; Rudnick, Daniel L. ; D’Asaro, EricIntensive hydrographic and horizontal velocity measurements collected in the Alboran Sea enabled us to diagnose the three‐dimensional dynamics of a frontal system. The sampled domain was characterized by a 40 km diameter anticyclonic eddy, with an intense front on its eastern side, separating the Atlantic and Mediterranean waters. Here, we implemented a multi‐variate variational analysis (VA) to reconstruct the hydrographic fields, combining the 1‐km horizontal resolution of the Underway Conductivity‐Temperature‐Depth (CTD) system with information on the flow shape from the Acoustic Doppler Current Profiler velocities. One advantage of the VA is given by the physical constraint, which preserves fine‐scale gradients better than the classical optimal interpolation (OI). A comparison between real drifter trajectories and virtual particles advected in the mapping quantified the improvements in the VA over the OI, with a 15% larger skill score. Quasi‐geostrophic (QG) and semi‐geostrophic (SG) omega equations enabled us to estimate the vertical velocity (w) which reached 40 m/day on the dense side of the front. How nutrients and other passive tracers leave the mixed‐layer and subduct is estimated with 3D advection from the VA, which agreed with biological sampling from traditional CTD casts at two eddy locations. Downwelling warm filaments are further evidence of subduction, in line with the w from SG, but not with QG. SG better accounted for the along‐isopycnal component of w in agreement with another analysis made on isopycnal coordinates. The multi‐platform approach of this work and the use of variational methods improved the characterization and understanding of (sub)‐mesoscale frontal dynamics.
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ArticleThe Pacific Equatorial Undercurrent in three generations of global climate models and glider observations(American Geophysical Union, 2020-10-22) Karnauskas, Kristopher B. ; Jakoboski, Julie K. ; Johnston, T. M. Shaun ; Owens, W. Brechner ; Rudnick, Daniel L. ; Todd, Robert E.The Equatorial Undercurrent (EUC) is a vital component of the coupled ocean‐atmosphere system in the tropical Pacific. The details of its termination near the Galápagos Islands in the eastern Pacific have an outsized importance to regional circulation and ecosystems. Subject to diverse physical processes, the EUC is also a rigorous benchmark for global climate models (GCMs). Simulations of the EUC in three generations of GCMs are evaluated relative to recent underwater glider observations along 93°W. Simulations of the EUC have improved, but a slow bias of ~36% remains in the eastern Pacific, along with a dependence on resolution. Additionally, the westward surface current is too slow, and stratification is too strong (weak) by ~50% above (within) the EUC. These biases have implications for mixing in the equatorial cold tongue. Downstream lies the Galápagos, now resolved to varying degrees by GCMs. Properly representing the Galápagos is necessary to avoid new biases as the EUC improves.
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ArticleFlow Encountering Abrupt Topography (FLEAT): a multiscale observational and modeling program to understand how topography affects flows in the western North Pacific(Oceanography Society, 2019-12-11) Johnston, T. M. Shaun ; Schönau, Martha ; Paluszkiewicz, Theresa ; MacKinnon, Jennifer A. ; Arbic, Brian K. ; Colin, Patrick L. ; Alford, Matthew H. ; Andres, Magdalena ; Centurioni, Luca R. ; Graber, Hans C. ; Helfrich, Karl R. ; Hormann, Verena ; Lermusiaux, Pierre F. J. ; Musgrave, Ruth C. ; Powell, Brian S. ; Qiu, Bo ; Rudnick, Daniel L. ; Simmons, Harper L. ; St. Laurent, Louis C. ; Terrill, Eric ; Trossman, David S. ; Voet, Gunnar ; Wijesekera, Hemantha W. ; Zeide, Kristin L.Using a combination of models and observations, the US Office of Naval Research Flow Encountering Abrupt Topography (FLEAT) initiative examines how island chains and submerged ridges affect open ocean current systems, from the hundreds of kilometer scale of large current features to the millimeter scale of turbulence. FLEAT focuses on the western Pacific, mainly on equatorial currents that encounter steep topography near the island nation of Palau. Wake eddies and lee waves as small as 1 km were observed to form as these currents flowed around or over the steep topography. The direction and vertical structure of the incident flow varied over tidal, inertial, seasonal, and interannual timescales, with implications for downstream flow. Models incorporated tides and had grids with resolutions of hundreds of meters to enable predictions of flow transformations as waters encountered and passed around Palau’s islands. In addition to making scientific advances, FLEAT had a positive impact on the local Palauan community by bringing new technology to explore local waters, expanding the country’s scientific infrastructure, maintaining collaborations with Palauan partners, and conducting outreach activities aimed at elementary and high school students, US embassy personnel, and Palauan government officials.
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ArticleASIRI : an ocean–atmosphere initiative for Bay of Bengal(American Meteorological Society, 2016-11-22) Wijesekera, Hemantha W. ; Shroyer, Emily L. ; Tandon, Amit ; Ravichandran, M. ; Sengupta, Debasis ; Jinadasa, S. U. P. ; Fernando, Harindra J. S. ; Agrawal, Neeraj ; Arulananthan, India K. ; Bhat, G. S. ; Baumgartner, Mark F. ; Buckley, Jared ; Centurioni, Luca R. ; Conry, Patrick ; Farrar, J. Thomas ; Gordon, Arnold L. ; Hormann, Verena ; Jarosz, Ewa ; Jensen, Tommy G. ; Johnston, T. M. Shaun ; Lankhorst, Matthias ; Lee, Craig M. ; Leo, Laura S. ; Lozovatsky, Iossif ; Lucas, Andrew J. ; MacKinnon, Jennifer A. ; Mahadevan, Amala ; Nash, Jonathan D. ; Omand, Melissa M. ; Pham, Hieu ; Pinkel, Robert ; Rainville, Luc ; Ramachandran, Sanjiv ; Rudnick, Daniel L. ; Sarkar, Sutanu ; Send, Uwe ; Sharma, Rashmi ; Simmons, Harper L. ; Stafford, Kathleen M. ; St. Laurent, Louis C. ; Venayagamoorthy, Subhas K. ; Venkatesan, Ramasamy ; Teague, William J. ; Wang, David W. ; Waterhouse, Amy F. ; Weller, Robert A. ; Whalen, Caitlin B.Air–Sea Interactions in the Northern Indian Ocean (ASIRI) is an international research effort (2013–17) aimed at understanding and quantifying coupled atmosphere–ocean dynamics of the Bay of Bengal (BoB) with relevance to Indian Ocean monsoons. Working collaboratively, more than 20 research institutions are acquiring field observations coupled with operational and high-resolution models to address scientific issues that have stymied the monsoon predictability. ASIRI combines new and mature observational technologies to resolve submesoscale to regional-scale currents and hydrophysical fields. These data reveal BoB’s sharp frontal features, submesoscale variability, low-salinity lenses and filaments, and shallow mixed layers, with relatively weak turbulent mixing. Observed physical features include energetic high-frequency internal waves in the southern BoB, energetic mesoscale and submesoscale features including an intrathermocline eddy in the central BoB, and a high-resolution view of the exchange along the periphery of Sri Lanka, which includes the 100-km-wide East India Coastal Current (EICC) carrying low-salinity water out of the BoB and an adjacent, broad northward flow (∼300 km wide) that carries high-salinity water into BoB during the northeast monsoon. Atmospheric boundary layer (ABL) observations during the decaying phase of the Madden–Julian oscillation (MJO) permit the study of multiscale atmospheric processes associated with non-MJO phenomena and their impacts on the marine boundary layer. Underway analyses that integrate observations and numerical simulations shed light on how air–sea interactions control the ABL and upper-ocean processes.
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ArticleDrifter observations reveal intense vertical velocity in a surface ocean front(American Geophysical Union, 2022-09-03) Tarry, Daniel R. ; Ruiz, Simon ; Johnston, T. M. Shaun ; Poulain, Pierre Marie ; Ozgokmen, Tamay M. ; Centurioni, Luca R. ; Berta, Maristella ; Esposito, Giovanni ; Farrar, J. Thomas ; Mahadevan, Amala ; Pascual, AnandaMeasuring vertical motions represent a challenge as they are typically 3–4 orders of magnitude smaller than the horizontal velocities. Here, we show that surface vertical velocities are intensified at submesoscales and are dominated by high frequency variability. We use drifter observations to calculate divergence and vertical velocities in the upper 15 m of the water column at two different horizontal scales. The drifters, deployed at the edge of a mesoscale eddy in the Alboran Sea, show an area of strong convergence (urn:x-wiley:00948276:media:grl64766:grl64766-math-0001(f)) associated with vertical velocities of −100 m day−1. This study shows that a multilayered-drifter array can be an effective tool for estimating vertical velocity near the ocean surface.
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ArticleInertial oscillations and frontal processes in an Alboran Sea Jet: effects on divergence and vertical transport(American Geophysical Union, 2023-02-15) Esposito, Giovanni ; Donnet, Sebastien ; Berta, Maristella ; Shcherbina, Andrey Y. ; Freilich, Mara ; Centurioni, Luca ; D’Asaro, Eric A. ; Farrar, J. Thomas ; Johnston, T. M. Shaun ; Mahadevan, Amala ; Özgökmen, Tamay ; Pascual, Ananda ; Poulain, Pierre‐Marie ; Ruiz, Simón ; Tarry, Daniel R. ; Griffa, AnnalisaVertical transport pathways in the ocean are still only partially understood despite their importance for biogeochemical, pollutant, and climate applications. Detailed measurements of a submesoscale frontal jet in the Alboran Sea (Mediterranean Sea) during a period of highly variable winds were made using cross‐frontal velocity, density sections and dense arrays of surface drifters deployed across the front. The measurements show divergences as large as ±f implying vertical velocities of order 100 m/day for a ≈ 20 m thick surface layer. Over the 20 hr of measurement, the divergences made nearly one complete oscillation, suggesting an important role for near‐inertial oscillations. A wind‐forced slab model modified by the observed background frontal structure and with initial conditions matched to the data produces divergence oscillations and pattern compatible with that observed. Significant differences, though, are found in terms of mean divergence, with the data showing a prevalence of negative, convergent values. Despite the limitations in data sampling and model uncertainties, this suggests the contribution of other dynamical processes. Turbulent boundary layer processes are discussed, as a contributor to enhance the observed convergent phase. Water mass properties suggest that symmetric instabilities might also be present but do not play a crucial role, while downward stirring along displaced isopycnals is observed.Plain Language SummaryVertical transport pathways are essential for the exchange of properties between the surface and the deeper layers of the ocean. Despite the recognized role of vertical dynamics in biogeochemical and climate applications, it is still only partially understood. This is principally due to observational challenges. Vertical transport pathways are generally very localized processes and are associated with vertical velocities comparable to instrumental uncertainty. In this work, we focus on vertical processes occurring along a front at the edge of an eddy in the Mediterranean Sea. The paper combines the analysis of multiple observations with the use of an idealized numerical model to isolate and study surface divergence patterns. These analyses allow the investigation of the role of the wind forcing and of small‐scale ocean processes in vertical transport.Key PointsDivergence and vertical velocity oscillations are observed at a submesoscale front on the edge of an anticyclone in the Alboran SeaNear‐inertial oscillations play a major role in the observed divergence oscillatory pattern as suggested by a modified slab model of a wind‐forced frontal jetTurbulent boundary layer processes and symmetric instabilities can contribute to differences between modeled and observed vertical dynamics
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PreprintThe formation and fate of internal waves in the South China Sea( 2015-03) Alford, Matthew H. ; Peacock, Thomas ; MacKinnon, Jennifer A. ; Nash, Jonathan D. ; Buijsman, Maarten C. ; Centurioni, Luca R. ; Chao, Shenn-Yu ; Chang, Ming-Huei ; Farmer, David M. ; Fringer, Oliver B. ; Fu, Ke-Hsien ; Gallacher, Patrick C. ; Graber, Hans C. ; Helfrich, Karl R. ; Jachec, Steven M. ; Jackson, Christopher R. ; Klymak, Jody M. ; Ko, Dong S. ; Jan, Sen ; Johnston, T. M. Shaun ; Legg, Sonya ; Lee, I-Huan ; Lien, Ren-Chieh ; Mercier, Matthieu J. ; Moum, James N. ; Musgrave, Ruth C. ; Park, Jae-Hun ; Pickering, Andrew I. ; Pinkel, Robert ; Rainville, Luc ; Ramp, Steven R. ; Rudnick, Daniel L. ; Sarkar, Sutanu ; Scotti, Alberto ; Simmons, Harper L. ; St Laurent, Louis C. ; Venayagamoorthy, Subhas K. ; Wang, Yu-Huai ; Wang, Joe ; Yang, Yiing-Jang ; Paluszkiewicz, Theresa ; Tang, Tswen YungInternal gravity waves, the subsurface analogue of the familiar surface gravity waves that break on beaches, are ubiquitous in the ocean. Because of their strong vertical and horizontal currents, and the turbulent mixing caused by their breaking, they impact a panoply of ocean processes, such as the supply of nutrients for photosynthesis1, sediment and pollutant transport2 and acoustic transmission3; they also pose hazards for manmade structures in the ocean4. Generated primarily by the wind and the tides, internal waves can travel thousands of kilometres from their sources before breaking5, posing severe challenges for their observation and their inclusion in numerical climate models, which are sensitive to their effects6-7. Over a decade of studies8-11 have targeted the South China Sea, where the oceans’ most powerful internal waves are generated in the Luzon Strait and steepen dramatically as they propagate west. Confusion has persisted regarding their generation mechanism, variability and energy budget, however, due to the lack of in-situ data from the Luzon Strait, where extreme flow conditions make measurements challenging. Here we employ new observations and numerical models to (i) show that the waves begin as sinusoidal disturbances rather than from sharp hydraulic phenomena, (ii) reveal the existence of >200-m-high breaking internal waves in the generation region that give rise to turbulence levels >10,000 times that in the open ocean, (iii) determine that the Kuroshio western boundary current significantly refracts the internal wave field emanating from the Luzon Strait, and (iv) demonstrate a factor-of-two agreement between modelled and observed energy fluxes that enables the first observationally-supported energy budget of the region. Together, these findings give a cradle-to-grave picture of internal waves on a basin scale, which will support further improvements of their representation in numerical climate predictions.
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Article3D intrusions transport active surface microbial assemblages to the dark ocean(National Academy of Sciences, 2024-05-02) Freilich, Mara A. ; Poirier, Camille ; Dever, Mathieu ; Alou-Font, Eva ; Allen, John ; Cabornero, Andrea ; Sudek, Lisa ; Choi, Chang Jae ; Ruiz, Simon ; Pascual, Ananda ; Farrar, J. Thomas ; Johnston, T. M. Shaun ; D'Asaro, Eric A. ; Worden, Alexandra Z. ; Mahadevan, AmalaSubtropical oceans contribute significantly to global primary production, but the fate of the picophytoplankton that dominate in these low-nutrient regions is poorly understood. Working in the subtropical Mediterranean, we demonstrate that subduction of water at ocean fronts generates 3D intrusions with uncharacteristically high carbon, chlorophyll, and oxygen that extend below the sunlit photic zone into the dark ocean. These contain fresh picophytoplankton assemblages that resemble the photic-zone regions where the water originated. Intrusions propagate depth-dependent seasonal variations in microbial assemblages into the ocean interior. Strikingly, the intrusions included dominant biomass contributions from nonphotosynthetic bacteria and enrichment of enigmatic heterotrophic bacterial lineages. Thus, the intrusions not only deliver material that differs in composition and nutritional character from sinking detrital particles, but also drive shifts in bacterial community composition, organic matter processing, and interactions between surface and deep communities. Modeling efforts paired with global observations demonstrate that subduction can flux similar magnitudes of particulate organic carbon as sinking export, but is not accounted for in current export estimates and carbon cycle models. Intrusions formed by subduction are a particularly important mechanism for enhancing connectivity between surface and upper mesopelagic ecosystems in stratified subtropical ocean environments that are expanding due to the warming climate.