Klepac-Ceraj Vanja

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Klepac-Ceraj
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Vanja
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  • Preprint
    Consumption of atmospheric hydrogen during the life cycle of soil-dwelling actinobacteria
    ( 2013-10) Meredith, Laura K. ; Rao, Deepa ; Bosak, Tanja ; Klepac-Ceraj, Vanja ; Tada, Kendall R. ; Hansel, Colleen M. ; Ono, Shuhei ; Prinn, Ronald G.
    Microbe-mediated soil uptake is the largest and most uncertain variable in the budget of atmospheric hydrogen (H2). The diversity and ecophysiological role of soil microorganisms that can consume low atmospheric abundances of H2 with high-affinity [NiFe]-hydrogenases is unknown. We expanded the library of atmospheric H2-consuming strains to include four soil Harvard Forest Isolate (HFI) Streptomyces spp., Streptomyces cattleya, and Rhodococcus equi by assaying for high-affinity hydrogenase (hhyL) genes and quantifying H2 uptake rates. We find that aerial structures (hyphae and spores) are important for Streptomyces H2 consumption; uptake was not observed in Streptomyces griseoflavus Tu4000 (deficient in aerial structures) and was reduced by physical disruption of Streptomyces sp. HFI8 aerial structures. H2 consumption depended on the life cycle stage in developmentally distinct actinobacteria: Streptomyces sp. HFI8 (sporulating) and R. equi (non-sporulating, non-filamentous). Strain HFI8 took up H2 only after forming aerial hyphae and sporulating, while R. equi only consumed H2 in the late exponential and stationary phase. These observations suggest that conditions favoring H2 uptake by actinobacteria are associated with energy and nutrient limitation. Thus, H2 may be an important energy source for soil microorganisms inhabiting systems in which nutrients are frequently limited.
  • Preprint
    Genotypic diversity within a natural coastal bacterioplankton population
    ( 2005-01-04) Thompson, Janelle R. ; Pacocha, Sarah E. ; Pharino, Chanathip ; Klepac-Ceraj, Vanja ; Hunt, Dana E. ; Benoit, Jennifer ; Sarma-Rupavtarm, Ramahi ; Distel, Daniel L. ; Polz, Martin F.
    The genomic diversity and relative importance of unique genotypes within natural bacterial populations has remained largely unknown. Here, we analyze the diversity and annual dynamics of a group of coastal bacterioplankton (>99% 16S rRNA identity to Vibrio splendidus). We show that this group consists of at least a thousand distinct genotypes, each occurring at extremely low environmental concentrations (on average <1 cell/ml). Overall, the genomes show extensive allelic diversity and size variation. Individual genotypes rarely recurred in samples and allelic distribution did not show spatial or temporal substructure. Ecological considerations suggest that much genotypic and possibly phenotypic variation within natural populations should be considered neutral.