Upper ocean responses to tropical storms/hurricanes have been extensively studied using satellite observations. However, resolving concurrent sea surface temperature (SST) and chlorophyll α (chl α) responses along storm tracks remains a major challenge due to extensive cloud coverage in satellite images. Here we produce daily cloud-free SST and chl α reconstructions based on the Data INterpolating Empirical Orthogonal Function method over a 10 year period (2003–2012) for the Gulf of Mexico and Sargasso Sea regions. Daily reconstructions allow us to characterize and contrast previously obscured subweekly SST and chl α responses to storms in the two main storm-impacted regions of the Atlantic Ocean. Statistical analyses of daily SST and chl α responses revealed regional differences in the response time as well as the response sensitivity to maximum sustained wind speed and translation speed. This study demonstrates that SST and chl α responses clearly depend on regional ocean conditions and are not as universal as might have been previously suggested.