Suga Koushirou

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Suga
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Koushirou
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  • Article
    On the future of Argo: A global, full-depth, multi-disciplinary array
    (Frontiers Media, 2019-08-02) Roemmich, Dean ; Alford, Matthew H. ; Claustre, Hervé ; Johnson, Kenneth S. ; King, Brian ; Moum, James N. ; Oke, Peter ; Owens, W. Brechner ; Pouliquen, Sylvie ; Purkey, Sarah G. ; Scanderbeg, Megan ; Suga, Koushirou ; Wijffels, Susan E. ; Zilberman, Nathalie ; Bakker, Dorothee ; Baringer, Molly O. ; Belbeoch, Mathieu ; Bittig, Henry C. ; Boss, Emmanuel S. ; Calil, Paulo H. R. ; Carse, Fiona ; Carval, Thierry ; Chai, Fei ; Conchubhair, Diarmuid Ó. ; d’Ortenzio, Fabrizio ; Dall'Olmo, Giorgio ; Desbruyeres, Damien ; Fennel, Katja ; Fer, Ilker ; Ferrari, Raffaele ; Forget, Gael ; Freeland, Howard ; Fujiki, Tetsuichi ; Gehlen, Marion ; Geenan, Blair ; Hallberg, Robert ; Hibiya, Toshiyuki ; Hosoda, Shigeki ; Jayne, Steven R. ; Jochum, Markus ; Johnson, Gregory C. ; Kang, KiRyong ; Kolodziejczyk, Nicolas ; Körtzinger, Arne ; Le Traon, Pierre-Yves ; Lenn, Yueng-Djern ; Maze, Guillaume ; Mork, Kjell Arne ; Morris, Tamaryn ; Nagai, Takeyoshi ; Nash, Jonathan D. ; Naveira Garabato, Alberto C. ; Olsen, Are ; Pattabhi Rama Rao, Eluri ; Prakash, Satya ; Riser, Stephen C. ; Schmechtig, Catherine ; Schmid, Claudia ; Shroyer, Emily L. ; Sterl, Andreas ; Sutton, Philip J. H. ; Talley, Lynne D. ; Tanhua, Toste ; Thierry, Virginie ; Thomalla, Sandy J. ; Toole, John M. ; Troisi, Ariel ; Trull, Thomas W. ; Turton, Jon ; Velez-Belchi, Pedro ; Walczowski, Waldemar ; Wang, Haili ; Wanninkhof, Rik ; Waterhouse, Amy F. ; Waterman, Stephanie N. ; Watson, Andrew J. ; Wilson, Cara ; Wong, Annie P. S. ; Xu, Jianping ; Yasuda, Ichiro
    The Argo Program has been implemented and sustained for almost two decades, as a global array of about 4000 profiling floats. Argo provides continuous observations of ocean temperature and salinity versus pressure, from the sea surface to 2000 dbar. The successful installation of the Argo array and its innovative data management system arose opportunistically from the combination of great scientific need and technological innovation. Through the data system, Argo provides fundamental physical observations with broad societally-valuable applications, built on the cost-efficient and robust technologies of autonomous profiling floats. Following recent advances in platform and sensor technologies, even greater opportunity exists now than 20 years ago to (i) improve Argo’s global coverage and value beyond the original design, (ii) extend Argo to span the full ocean depth, (iii) add biogeochemical sensors for improved understanding of oceanic cycles of carbon, nutrients, and ecosystems, and (iv) consider experimental sensors that might be included in the future, for example to document the spatial and temporal patterns of ocean mixing. For Core Argo and each of these enhancements, the past, present, and future progression along a path from experimental deployments to regional pilot arrays to global implementation is described. The objective is to create a fully global, top-to-bottom, dynamically complete, and multidisciplinary Argo Program that will integrate seamlessly with satellite and with other in situ elements of the Global Ocean Observing System (Legler et al., 2015). The integrated system will deliver operational reanalysis and forecasting capability, and assessment of the state and variability of the climate system with respect to physical, biogeochemical, and ecosystems parameters. It will enable basic research of unprecedented breadth and magnitude, and a wealth of ocean-education and outreach opportunities.
  • Article
    Analysis of expressed sequence tags of the cyclically parthenogenetic rotifer Brachionus plicatilis
    (Public Library of Science, 2007-08-01) Suga, Koushirou ; Mark Welch, David B. ; Tanaka, Yukari ; Sakakura, Yoshitaka ; Hagiwara, Atsushi
    Rotifers are among the most common non-arthropod animals and are the most experimentally tractable members of the basal assemblage of metazoan phyla known as Gnathifera. The monogonont rotifer Brachionus plicatilis is a developing model system for ecotoxicology, aquatic ecology, cryptic speciation, and the evolution of sex, and is an important food source for finfish aquaculture. However, basic knowledge of the genome and transcriptome of any rotifer species has been lacking. We generated and partially sequenced a cDNA library from B. plicatilis and constructed a database of over 2300 expressed sequence tags corresponding to more than 450 transcripts. About 20% of the transcripts had no significant similarity to database sequences by BLAST; most of these contained open reading frames of significant length but few had recognized Pfam motifs. Sixteen transcripts accounted for 25% of the ESTs; four of these had no significant similarity to BLAST or Pfam databases. Putative up- and downstream untranslated regions are relatively short and AT rich. In contrast to bdelloid rotifers, there was no evidence of a conserved trans-spliced leader sequence among the transcripts and most genes were single-copy. Despite the small size of this EST project it revealed several important features of the rotifer transcriptome and of individual monogonont genes. Because there is little genomic data for Gnathifera, the transcripts we found with no known function may represent genes that are species-, class-, phylum- or even superphylum-specific; the fact that some are among the most highly expressed indicates their importance. The absence of trans-spliced leader exons in this monogonont species contrasts with their abundance in bdelloid rotifers and indicates that the presence of this phenomenon can vary at the subphylum level. Our EST database provides a relatively large quantity of transcript-level data for B. plicatilis, and more generally of rotifers and other gnathiferan phyla, and can be browsed and searched at gmod.mbl.edu.