Gallager
Scott M.
Gallager
Scott M.
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ArticleDirect observations of microscale turbulence and thermohaline structure in the Kuroshio Front(American Geophysical Union, 2012-08-09) Nagai, Takeyoshi ; Tandon, Amit ; Yamazaki, Hidekatsu ; Doubell, Mark J. ; Gallager, Scott M.Direct observations of microstructure near the Kuroshio Front were conducted in August 2008 and October 2009. These show negative potential vorticity (PV) in the mixed layer south of the front, where directly measured turbulent kinetic energy dissipation rates are an order magnitude larger than predicted by wind-scaling. These elevated dissipation rates scale better with an empirical scaling, which considers local wind and Ekman buoyancy flux driven by downfront wind. Near-zero PV in the thermocline under the Kuroshio mainstream is observed at 200–300 m depth, with dissipation exceeding open ocean thermocline values by factors of 10–100. Overall, the large turbulent dissipation rates measured in the Kuroshio can be categorized into two groups, one characterized by low Richardson number along the Kuroshio Front thermocline, and the other characterized by high stratification away from the Kuroshio mainstream. The former is attributed to mixing by unbalanced frontal ageostrophic flows, and the latter is attributed to internal wave breaking. On average, both groups appear in regions of large horizontal density gradients. Observed thermohaline structure shows low salinity tongues from the surface to over 300 m depth and deep cold tongues, extending upward from 500 to 100 m depth in a narrow (20 km) zone, suggesting down and upwelling driven by geostrophic straining, which is confirmed by Quasigeostrophic-Omega equation solutions. This implies that adiabatic along isopycnal subduction and diabatic diapycnal turbulent mixing acting in tandem at the Kuroshio Front likely contribute to NPIW formation.
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ArticleGlobally consistent quantitative observations of planktonic ecosystems(Frontiers Media, 2019-04-25) Lombard, Fabien ; Boss, Emmanuel S. ; Waite, Anya M. ; Vogt, Meike ; Uitz, Julia ; Stemmann, Lars ; Sosik, Heidi M. ; Schulz, Jan ; Romagnan, Jean-Baptiste ; Picheral, Marc ; Pearlman, Jay ; Ohman, Mark D. ; Niehoff, Barbara ; Möller, Klas O. ; Miloslavich, Patricia ; Lara-Lpez, Ana ; Kudela, Raphael M. ; Lopes, Rubens M. ; Kiko, Rainer ; Karp-Boss, Lee ; Jaffe, Jules S. ; Iversen, Morten H. ; Irisson, Jean-Olivier ; Fennel, Katja ; Hauss, Helena ; Guidi, Lionel ; Gorsky, Gabriel ; Giering, Sarah L. C. ; Gaube, Peter ; Gallager, Scott M. ; Dubelaar, George ; Cowen, Robert K. ; Carlotti, François ; Briseño-Avena, Christian ; Berline, Leo ; Benoit-Bird, Kelly J. ; Bax, Nicholas ; Batten, Sonia ; Ayata, Sakina Dorothée ; Artigas, Luis Felipe ; Appeltans, WardIn this paper we review the technologies available to make globally quantitative observations of particles in general—and plankton in particular—in the world oceans, and for sizes varying from sub-microns to centimeters. Some of these technologies have been available for years while others have only recently emerged. Use of these technologies is critical to improve understanding of the processes that control abundances, distributions and composition of plankton, provide data necessary to constrain and improve ecosystem and biogeochemical models, and forecast changes in marine ecosystems in light of climate change. In this paper we begin by providing the motivation for plankton observations, quantification and diversity qualification on a global scale. We then expand on the state-of-the-art, detailing a variety of relevant and (mostly) mature technologies and measurements, including bulk measurements of plankton, pigment composition, uses of genomic, optical and acoustical methods as well as analysis using particle counters, flow cytometers and quantitative imaging devices. We follow by highlighting the requirements necessary for a plankton observing system, the approach to achieve it and associated challenges. We conclude with ranked action-item recommendations for the next 10 years to move toward our vision of a holistic ocean-wide plankton observing system. Particularly, we suggest to begin with a demonstration project on a GO-SHIP line and/or a long-term observation site and expand from there, ensuring that issues associated with methods, observation tools, data analysis, quality assessment and curation are addressed early in the implementation. Global coordination is key for the success of this vision and will bring new insights on processes associated with nutrient regeneration, ocean production, fisheries and carbon sequestration.
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ArticleSemi-automated image analysis for the identification of bivalve larvae from a Cape Cod estuary(Association for the Sciences of Limnology and Oceanography, 2012-07) Thompson, Christine M. ; Hare, Matthew P. ; Gallager, Scott M.Machine-learning methods for identifying planktonic organisms are becoming well-established. Although similar morphologies among species make traditional image identification methods difficult for larval bivalves, species-specific shell birefringence patterns under polarized light permit identification by color and texture-based features. This approach uses cross-polarized images of bivalve larvae, extracts Gabor and color angle features from each image, and classifies images using a Support Vector Machine. We adapted this method, which was established on hatchery-reared larvae, to identify bivalve larvae from a series of field samples from a Cape Cod estuary in 2009. This method had 98% identification accuracy for four hatchery-reared species. We used a multiplex polymerase chain reaction (PCR) method to confirm field identifications and to compare accuracies to the software classifications. Image classification of larvae collected in the field had lower accuracies than both the classification of hatchery species and PCR-based identification due to error in visually classifying unknown larvae and variability in larval images from the field. A six-species field training set had the best correspondence to our visual classifications with 75% overall agreement and individual species agreements from 63% to 88%. Larval abundance estimates for a time-series of field samples showed good correspondence with visual methods after correction. Overall, this approach represents a cost- and time-saving alternative to molecular-based identifications and can produce sufficient results to address long-term abundance and transport-based questions on a species-specific level, a rarity in studies of bivalve larvae.
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PreprintEffects of turbulence on the feeding rate of a pelagic predator : the planktonic hydroid Clytia gracilis( 2005-12-14) Adamik, Peter ; Gallager, Scott M. ; Horgan, Erich F. ; Madin, Laurence P. ; McGillis, Wade R. ; Govindarajan, Annette F. ; Alatalo, PhilipRelatively little is known about the role of turbulence in a predator - prey system where the predator is a passive, pelagic forager. The Campanulariid hydroid Clytia gracilis (Cnidaria, Hydrozoa) is unusual because it occurs as planktonic colonies and is reported to forage passively in the water column on Georges Bank, Massachusetts, USA. In this study we investigated the role of various turbulence conditions on the feeding rate of C. gracilis colonies in laboratory experiments. We found a positive relationship between turbulence velocities and feeding rates up to a turbulent energy dissipation rate of ca 1 cm2 s-3. Beyond this threshold feeding rate decreased slightly, indicating a dome-shaped relationship. Additionally, a negative relationship was found between feeding efficiency and hydroid colony size under lower turbulent velocities, but this trend was not significant under higher turbulence regimes.
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ArticleDynamics and energetics of trapped diurnal internal Kelvin waves around a midlatitude lsland(American Meteorological Society, 2017-10-12) Masunaga, Eiji ; Fringer, Oliver B. ; Kitade, Yujiro ; Yamazaki, Hidekatsu ; Gallager, Scott M.The generation of trapped and radiating internal tides around Izu‐Oshima Island located off Sagami Bay, Japan, is investigated using the three-dimensional Stanford Unstructured Nonhydrostatic Terrain-following Adaptive Navier–Stokes Simulator (SUNTANS) that is validated with observations of isotherm displacements in shallow water. The model is forced by barotropic tides, which generate strong baroclinic internal tides in the study region. Model results showed that when diurnal K1 barotropic tides dominate, resonance of a trapped internal Kelvin wave leads to large-amplitude internal tides in shallow waters on the coast. This resonance produces diurnal motions that are much stronger than the semidiurnal motions. The weaker, freely propagating, semidiurnal internal tides are generated on the western side of the island, where the M2 internal tide beam angle matches the topographic slope. The internal wave energy flux due to the diurnal internal tides is much higher than that of the semidiurnal tides in the study region. Although the diurnal internal tide energy is trapped, this study shows that steepening of the Kelvin waves produces high-frequency internal tides that radiate from the island, thus acting as a mechanism to extract energy from the diurnal motions.
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Working PaperPump it Up workshop report(Woods Hole Oceanographic Institution, 2017-10-20) Buesseler, Ken O. ; Adams, Allan ; Bellingham, James G. ; Dever, Mathieu ; Edgcomb, Virginia P. ; Estapa, Margaret L. ; Frank, Alex ; Gallager, Scott M. ; Govindarajan, Annette F. ; Horner, Tristan J. ; Hunter, Jon ; Jakuba, Michael V. ; Kapit, Jason ; Katija, Kakani ; Lawson, Gareth L. ; Lu, Yuehan ; Mahadevan, Amala ; Nicholson, David P. ; Omand, Melissa M. ; Palevsky, Hilary I. ; Rauch, Chris ; Sosik, Heidi M. ; Ulmer, Kevin M. ; Wurgaft, Eyal ; Yoerger, Dana R.A two-day workshop was conducted to trade ideas and brainstorm about how to advance our understanding of the ocean’s biological pump. The goal was to identify the most important scientific issues that are unresolved but might be addressed with new and future technological advances.
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PreprintContinuous monitoring of near-bottom mesoplankton communities in the East China Sea during a series of typhoons( 2014-12) Grossmann, Mary M. ; Gallager, Scott M. ; Mitarai, SatoshiTyphoons are a common feature of summer and autumn months in the East China Sea. These events often promote phytoplankton growth in surface waters as a result of upwelling and transport of nutrients, but their effects on sub-surface waters and ecosystems are little known. Furthermore, biological studies tend to focus on phytoplankton (using chlorophyll a assays), rather than on heterotrophic zooplankton. Indeed, measurements of biological and physicochemical changes induced by the storms are difficult to perform and risky, using standard shipboard sampling techniques. Using a camera mounted on an underwater, cabled observatory system in shallow coastal waters of Okinawa, Japan, we collected the first continuous, in-situ observations of the near-bottom, mesoplankton community during a series of typhoons. An increase in diatoms and radiolarians was found during all typhoons, whereas the response of larger zooplankton groups was variable between typhoons. A bloom of Trichodesmium cyanobacteria and diatoms was seen after a series of typhoons, while the total chlorophyll a concentration remained nearly unchanged at the sampling location. These findings shed new light on short-term responses of sub-surface ecosystems during typhoons.
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PreprintSpecies-specific abundance of bivalve larvae in relation to biological and physical conditions in a Cape Cod estuary : Waquoit Bay, Massachusetts (USA)( 2012-06) Thompson, Christine M. ; York, Richard H. ; Gallager, Scott M.Physical and biological conditions impact recruitment and adult population structure of 34 marine invertebrates by affecting early life history processes from spawning to post-settlement. We investigated how temperature, salinity and phytoplankton influenced larval abundance and larval size structure for three species of bivalves over two non-consecutive years in Waquoit Bay, MA. Abundance and size of Mercenaria mercenaria (quahog), Anomia simplex (jingle clam), and Geukensia demissa (ribbed mussel) larvae were compared between locations in the bay and with environmental conditions. Shell birefringence patterns using polarized light microscopy were used to distinguish species. Larval abundances for all three species were higher in 2009 than in 2007 and were positively correlated with temperature in both years. Differences in larval abundance and size structure between bay sites were attributed to salinity tolerances and potential source locations. Higher survival in 2009 than in 2007, as determined by number of pediveligers, was likely due to higher temperatures and greater food availability during the peak abundance months of July and August in 2009. Yearly differences in larval growth and survival can have a large impact on recruitment. Knowing the optimal periods and locations for larval abundance and survival can be useful for isolating species-specific patterns in larval dispersal and to aid resource managers in enhancing or restoring depleted populations.
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ArticleLaboratory-simulated photoirradiation reveals strong resistance of primary macroplastics to weathering(American Chemical Society, 2024-08-06) Jiang, Xiangtao ; Gallager, Scott ; Pedrosa-Pamies, Rut ; Ruff, S. Emil ; Liu, ZhanfeiThe photodegradation of macroplastics in the marine environment remains poorly understood. Here, we investigated the weathering of commercially available plastics (tabs 1.3 × 4.4 × 0.16 cm), including high-density polyethylene, low-density polyethylene, polypropylene, polystyrene, and polycarbonate, in seawater under laboratory-simulated ultraviolet A radiation for 3–9 months, equivalent to 25–75 years of natural sunlight exposure without considering other confounding factors. After the exposure, the physical integrity and thermal stability of the tabs remained relatively intact, suggesting that the bulk polymer chains were not severely altered despite strong irradiation, likely due to their low specific surface area. In contrast, the surface layer (∼1 μm) of the tabs was highly oxidized and eroded after 9 months of accelerated weathering. Several antioxidant additives were identified in the plastics through low temperature pyrolysis coupled with gas chromatography/mass spectrometry (Pyr-GC/MS) analysis. The Pyr-GC/MS results also revealed many new oxygen-containing compounds formed during photodegradation, and these compounds indicated the dominance of chain scission reactions during weathering. These findings highlight the strong resistance of industrial macroplastics to weathering, emphasizing the need for a broader range of plastics with varying properties and sizes to accurately estimate plastic degradation in the marine environment.