McDonnell
Andrew M. P.
McDonnell
Andrew M. P.
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ArticleHigh particle export over the continental shelf of the west Antarctic Peninsula(American Geophysical Union, 2010-11-24) Buesseler, Ken O. ; McDonnell, Andrew M. P. ; Schofield, Oscar M. E. ; Steinberg, Deborah K. ; Ducklow, Hugh W.Drifting cylindrical traps and the flux proxy 234Th indicate more than an order of magnitude higher sinking fluxes of particulate carbon and 234Th in January 2009 than measured by a time-series conical trap used regularly on the shelf of the west Antarctic Peninsula (WAP). The higher fluxes measured in this study have several implications for our understanding of the WAP ecosystem. Larger sinking fluxes result in a revised export efficiency of at least 10% (C flux/net primary production) and a requisite lower regeneration efficiency in surface waters. High fluxes also result in a large supply of sinking organic matter to support subsurface and benthic food webs on the continental shelf. These new findings call into question the magnitude of seasonal and interannual variability in particle flux and reaffirm the difficulty of using moored conical traps as a quantitative flux collector in shallow waters.
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ThesisMarine particle dynamics : sinking velocities, size distributions, fluxes, and microbial degradation rates(Massachusetts Institute of Technology and Woods Hole Oceanographic Institution, 2011-02) McDonnell, Andrew M. P.The sinking flux of particulate matter into the ocean interior is an oceanographic phenomenon that fuels much of the metabolic demand of the subsurface ocean and affects the distribution of carbon and other elements throughout the biosphere. In this thesis, I use a new suite of observations to study the dynamics of marine particulate matter at the contrasting sites of the subtropical Sargasso Sea near Bermuda and the waters above the continental shelf of the Western Antarctic Peninsula (WAP). An underwater digital camera system was employed to capture images of particles in the water column. The subsequent analysis of these images allowed for the determination of the particle concentration size distribution at high spatial, depth, and temporal resolutions. Drifting sediment traps were also deployed to assess both the bulk particle flux and determine the size distribution of the particle flux via image analysis of particles collected in polyacrylamide gel traps. The size distribution of the particle concentration and flux were then compared to calculate the average sinking velocity as a function of particle size. I found that the average sinking velocities of particles ranged from about 10-200 m d-1 and exhibited large variability with respect to location, depth, and date. Particles in the Sargasso Sea, which consisted primarily of small heterogeneous marine snow aggregates, sank more slowly than the rapidly sinking krill fecal pellets and diatom aggregates of the WAP. Moreover, the average sinking velocity did not follow a pattern of increasing velocities for the larger particles, a result contrary to what would be predicted from a simple formulation of Stokes’ Law. At each location, I derived a best-fit fractal correlation between the flux size distribution and the total carbon flux. The use of this relationship and the computed average sinking velocities enabled the estimation of particle flux from measurements of the particle concentration size distribution. This approach offers greatly improved spatial and temporal resolution when compared to traditional sediment trap methods for measuring the downward flux of particulate matter. Finally, I deployed specialized in situ incubation chambers to assess the respiration rates of microbes attached to sinking particles. I found that at Bermuda, the carbon specific remineralization rate of sinking particulate matter ranged from 0.2 to 1.1 d-1, while along the WAP, these rates were very slow and below the detection limit of the instruments. The high microbial respiration rates and slow sinking velocities in the Sargasso Sea resulted in the strong attenuation of the flux with respect to depth, whereas the rapid sinking velocities and slow microbial degradation rates of the WAP resulted in nearly constant fluxes with respect to depth.
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ArticleA new method for the estimation of sinking particle fluxes from measurements of the particle size distribution, average sinking velocity, and carbon content(Association for the Sciences of Limnology and Oceanography, 2012-05) McDonnell, Andrew M. P. ; Buesseler, Ken O.We describe a new method for estimating sinking particulate carbon fluxes at high spatial and temporal resolutions from measurements of the particle concentration size distribution taken with an in situ camera system, in this case an autonomous video plankton recorder (VPR). Paired measurements of polyacrylamide gel traps and the VPR result in depth- and size-resolved parameterizations of the average sinking velocity, which enable the estimation of the flux size distribution from the concentration size distribution. Comparisons between the gel traps and the bulk carbon flux allows for the parameterization of the particle carbon content as a function of size. Together, these parameterizations permit the estimation of carbon fluxes from high-resolution VPR surveys. This method enables greater spatial, vertical, and temporal resolution of flux measurements beyond what is possible with conventional sediment traps. We tested this method in the Sargasso Sea and found that it was capable of accurately reproducing the fluxes measured in sediment traps while offering substantial improvement in the accuracy of the estimated fluxes compared to previous global and regional parameterizations. Our results point to the importance of local calibrations of the average sinking velocity and particle carbon content when estimating carbon fluxes from measurement of the concentration size distribution. This method holds important oceanographic potential for elucidating regional or basin scale carbon flows and providing new mechanistic insights into the function of the biological pump.
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BookTowards a transformative understanding of the ocean’s biological pump: Priorities for future research - Report on the NSF Biology of the Biological Pump Workshop(Ocean Carbon & Biogeochemistry (OCB) Program, 2016-08-24) Burd, Adrian B. ; Buchan, Alison ; Church, Matthew J. ; Landry, Michael R. ; McDonnell, Andrew M. P. ; Passow, Uta ; Steinberg, Deborah K. ; Benway, Heather M.The net transfer of organic matter from the surface to the deep ocean is a key function of ocean food webs. The combination of biological, physical, and chemical processes that contribute to and control this export is collectively known as the “biological pump”, and current estimates of the global magnitude of this export range from 5 – 12 Pg C yr-1. This material can be exported in dissolved or particulate form, and many of the biological processes that regulate the composition, quantity, timing, and distribution of this export are poorly understood or constrained. Export of organic material is of fundamental importance to the biological and chemical functioning of the ocean, supporting deep ocean food webs and controlling the vertical and horizontal segregation of elements throughout the ocean. Remineralization of exported organic matter in the upper mesopelagic zone provides nutrients for surface production, while material exported to depths of 1000 m or more is generally considered to be sequestered — i.e. out of contact with the atmosphere for centuries or longer. The ability to accurately model a system is a reflection of the degree to which the system is understood. In the case of export, semi-empirical and simple mechanistic models show a wide range of predictive skill. This is, in part, due to the sparseness of available data, which impedes our inability to accurately represent, or even include, all relevant processes (sometimes for legitimate computational reasons). Predictions will remain uncertain without improved understanding and parameterization of key biological processes affecting export.
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ArticleSpatiotemporal variability and long-term trends of ocean acidification in the California Current System(Copernicus Publications on behalf of the European Geosciences Union, 2013-01-14) Hauri, Claudine ; Gruber, Nicolas ; Vogt, Meike ; Doney, Scott C. ; Feely, Richard A. ; Lachkar, Z. ; Leinweber, A. ; McDonnell, Andrew M. P. ; Munnich, M. ; Plattner, Gian-KasperDue to seasonal upwelling, the upper ocean waters of the California Current System (CCS) have a naturally low pH and aragonite saturation state (Ωarag), making this region particularly prone to the effects of ocean acidification. Here, we use the Regional Oceanic Modeling System (ROMS) to conduct preindustrial and transient (1995–2050) simulations of ocean biogeochemistry in the CCS. The transient simulations were forced with increasing atmospheric pCO2 and increasing oceanic dissolved inorganic carbon concentrations at the lateral boundaries, as projected by the NCAR CSM 1.4 model for the IPCC SRES A2 scenario. Our results show a large seasonal variability in pH (range of ~ 0.14) and Ωarag (~ 0.2) for the nearshore areas (50 km from shore). This variability is created by the interplay of physical and biogeochemical processes. Despite this large variability, we find that present-day pH and Ωarag have already moved outside of their simulated preindustrial variability envelopes (defined by ±1 temporal standard deviation) due to the rapidly increasing concentrations of atmospheric CO2. The nearshore surface pH of the northern and central CCS are simulated to move outside of their present-day variability envelopes by the mid-2040s and late 2030s, respectively. This transition may occur even earlier for nearshore surface Ωarag, which is projected to depart from its present-day variability envelope by the early- to mid-2030s. The aragonite saturation horizon of the central CCS is projected to shoal into the upper 75 m within the next 25 yr, causing near-permanent undersaturation in subsurface waters. Due to the model's overestimation of Ωarag, this transition may occur even earlier than simulated by the model. Overall, our study shows that the CCS joins the Arctic and Southern oceans as one of only a few known ocean regions presently approaching the dual threshold of widespread and near-permanent undersaturation with respect to aragonite and a departure from its variability envelope. In these regions, organisms may be forced to rapidly adjust to conditions that are both inherently chemically challenging and also substantially different from past conditions.
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ArticleEffects of sinking velocities and microbial respiration rates on the attenuation of particulate carbon fluxes through the mesopelagic zone(John Wiley & Sons, 2015-02-25) McDonnell, Andrew M. P. ; Boyd, Philip W. ; Buesseler, Ken O.The attenuation of sinking particle fluxes through the mesopelagic zone is an important process that controls the sequestration of carbon and the distribution of other elements throughout the oceans. Case studies at two contrasting sites, the oligotrophic regime of the Bermuda Atlantic Time-series Study (BATS) and the mesotrophic waters of the west Antarctic Peninsula (WAP) sector of the Southern Ocean, revealed large differences in the rates of particle-attached microbial respiration and the average sinking velocities of marine particles, two parameters that affect the transfer efficiency of particulate matter from the base of the euphotic zone into the deep ocean. Rapid average sinking velocities of 270 ± 150 m d−1 were observed along the WAP, whereas the average velocity was 49 ± 25 m d−1 at the BATS site. Respiration rates of particle-attached microbes were measured using novel RESPIRE (REspiration of Sinking Particles In the subsuRface ocEan) sediment traps that first intercepts sinking particles then incubates them in situ. RESPIRE experiments yielded flux-normalized respiration rates of 0.4 ± 0.1 day−1 at BATS when excluding an outlier of 1.52 day−1, while these rates were undetectable along the WAP (0.01 ± 0.02 day−1). At BATS, flux-normalized respiration rates decreased exponentially with respect to depth below the euphotic zone with a 75% reduction between the 150 and 500 m depths. These findings provide quantitative and mechanistic insights into the processes that control the transfer efficiency of particle flux through the mesopelagic and its variability throughout the global oceans.
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ArticleParticle size distribution at Ocean Station Papa from nanometers to millimeters constrained with intercomparison of seven methods(University of California Press, 2023-03-31) Zhang, Xiaodong ; Huot, Yannick ; Gray, Deric ; Sosik, Heidi M. ; Siegel, David ; Hu, Lianbo ; Xiong, Yuanheng ; Crockford, E. Taylor ; Potvin, Geneviève ; McDonnell, Andrew ; Roesler, CollinParticle size distribution (PSD) is a fundamental property that affects almost every aspect of the marine ecosystem, including ecological trophic interactions and transport of organic matter and trace elements. We measured PSDs using a suite of seven instruments in waters near Ocean Station Papa in the Northeast Pacific Ocean. These instruments and their sizing ranges are: Laser In-Situ Scattering and Transmissometer (LISST)-Volume Scattering Function meter (VSF) and Multispectral Volume Scattering Meter (MVSM), both sizing particles from 0.02 µm to 2000 µm; the LISST-100X, from 3 µm to 180 µm; the ViewSizer, from 0.3 µm to 2 µm; the Coulter Counter, from 2 µm to 40 µm; the Imaging Flow CytoBot (IFCB), from 5 µm to 100 μm; and the underwater vision profiler (UVP), from 100 µm to 2000 µm. Together, they cover an unprecedented size range spanning 5 orders of magnitude from 20 nm to 2 mm. The differences in size definition for the different instruments cause biases in comparing PSDs. The absolute differences in PSDs, after correcting for mean biases, were less than a factor of 3 among all the instruments, and within 50% among LISST-100X, LISST+MVSM, Coulter Counter and IFCB. We also found that particles of sizes <50 µm were not very porous; however, porosity must be considered for particles >50 µm. The merged PSDs, ranging from 0.02 µm to 2000 µm, showed little variation in the PSD slope in the upper 75 m of the water column even though the total number of particles decreased with depth. While submicrometer particles are numerically dominant, particles of sizes 1 µm to 100 µm account for 70–90% of the solid volume of particles. We expect that the results of this study will lead to improved estimates of mass and carbon flux in the study area.
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Working PaperEXPORTS Measurements and Protocols for the NE Pacific Campaign(NASA STI Program and Woods Hole Oceanographic Institution, 2021-02) Behrenfeld, Michael J. ; Benitez-Nelson, Claudia R. ; Boss, Emmanuel S. ; Brzezinski, Mark A. ; Buck, Kristen N. ; Buesseler, Ken O. ; Burd, Adrian B. ; Carlson, Craig A. ; Cassar, Nicolas ; Cetinić, Ivona ; Close, Hilary G. ; Craig, Susanne E. ; D'Asaro, Eric A. ; Durkin, Colleen A. ; Estapa, Margaret L. ; Fassbender, Andrea ; Fox, James ; Freeman, Scott ; Gifford, Scott M. ; Gong, Weida ; Graff, Jason R. ; Gray, Deric ; Guidi, Lionel ; Halsey, Kim ; Hansell, Dennis A. ; Haëntjens, Nils ; Horner, Tristan J. ; Jenkins, Bethany D. ; Jones, Janice L. ; Karp-Boss, Lee ; Kramer, Sasha J. ; Lam, Phoebe J. ; Lee, Craig M. ; Lee, Jong-Mi ; Liu, Shuting ; Mannino, Antonio ; Maas, Amy E. ; Marchal, Olivier ; Marchetti, Adrian ; McDonnell, Andrew M. P. ; McNair, Heather ; Menden-Deuer, Susanne ; Morison, Francoise ; Nelson, Norman B. ; Nicholson, David P. ; Niebergall, Alexandria K. ; Omand, Melissa M. ; Passow, Uta ; Perry, Mary J. ; Popp, Brian N. ; Proctor, Chris ; Rafter, Patrick ; Roca-Martí, Montserrat ; Roesler, Collin S. ; Rubin, Edwina ; Rynearson, Tatiana A. ; Santoro, Alyson E. ; Siegel, David A. ; Sosik, Heidi M. ; Soto Ramos, Inia ; Stamieszkin, Karen ; Steinberg, Deborah K. ; Stephens, Brandon M. ; Thompson, Andrew F. ; Van Mooy, Benjamin A. S. ; Zhang, XiaodongEXport Processes in the Ocean from Remote Sensing (EXPORTS) is a large-scale NASA-led and NSF co-funded field campaign that will provide critical information for quantifying the export and fate of upper ocean net primary production (NPP) using satellite information and state of the art technology.
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ArticleAn operational overview of the EXport Processes in the Ocean from RemoTe Sensing (EXPORTS) Northeast Pacific field deployment(University of California Press, 2021-07-07) Siegel, David A. ; Cetinić, Ivona ; Graff, Jason R. ; Lee, Craig M. ; Nelson, Norman B. ; Perry, Mary J. ; Soto Ramos, Inia ; Steinberg, Deborah K. ; Buesseler, Ken O. ; Hamme, Roberta C. ; Fassbender, Andrea ; Nicholson, David P. ; Omand, Melissa M. ; Robert, Marie ; Thompson, Andrew F. ; Amaral, Vinicius ; Behrenfeld, Michael J. ; Benitez-Nelson, Claudia R. ; Bisson, Kelsey ; Boss, Emmanuel S. ; Boyd, Philip ; Brzezinski, Mark A. ; Buck, Kristen N. ; Burd, Adrian B. ; Burns, Shannon ; Caprara, Salvatore ; Carlson, Craig A. ; Cassar, Nicolas ; Close, Hilary G. ; D'Asaro, Eric A. ; Durkin, Colleen A. ; Erickson, Zachary K. ; Estapa, Margaret L. ; Fields, Erik ; Fox, James ; Freeman, Scott ; Gifford, Scott M. ; Gong, Weida ; Gray, Deric ; Guidi, Lionel ; Haëntjens, Nils ; Halsey, Kim ; Huot, Yannick ; Hansell, Dennis A. ; Jenkins, Bethany D. ; Karp-Boss, Lee ; Kramer, Sasha J. ; Lam, Phoebe J. ; Lee, Jong-Mi ; Maas, Amy E. ; Marchal, Olivier ; Marchetti, Adrian ; McDonnell, Andrew M. P. ; McNair, Heather ; Menden-Deuer, Susanne ; Morison, Francoise ; Niebergall, Alexandria K. ; Passow, Uta ; Popp, Brian N. ; Potvin, Geneviève ; Resplandy, Laure ; Roca-Martí, Montserrat ; Roesler, Collin S. ; Rynearson, Tatiana A. ; Traylor, Shawnee ; Santoro, Alyson E. ; Seraphin, Kanesa ; Sosik, Heidi M. ; Stamieszkin, Karen ; Stephens, Brandon M. ; Tang, Weiyi ; Van Mooy, Benjamin ; Xiong, Yuanheng ; Zhang, XiaodongThe goal of the EXport Processes in the Ocean from RemoTe Sensing (EXPORTS) field campaign is to develop a predictive understanding of the export, fate, and carbon cycle impacts of global ocean net primary production. To accomplish this goal, observations of export flux pathways, plankton community composition, food web processes, and optical, physical, and biogeochemical (BGC) properties are needed over a range of ecosystem states. Here we introduce the first EXPORTS field deployment to Ocean Station Papa in the Northeast Pacific Ocean during summer of 2018, providing context for other papers in this special collection. The experiment was conducted with two ships: a Process Ship, focused on ecological rates, BGC fluxes, temporal changes in food web, and BGC and optical properties, that followed an instrumented Lagrangian float; and a Survey Ship that sampled BGC and optical properties in spatial patterns around the Process Ship. An array of autonomous underwater assets provided measurements over a range of spatial and temporal scales, and partnering programs and remote sensing observations provided additional observational context. The oceanographic setting was typical of late-summer conditions at Ocean Station Papa: a shallow mixed layer, strong vertical and weak horizontal gradients in hydrographic properties, sluggish sub-inertial currents, elevated macronutrient concentrations and low phytoplankton abundances. Although nutrient concentrations were consistent with previous observations, mixed layer chlorophyll was lower than typically observed, resulting in a deeper euphotic zone. Analyses of surface layer temperature and salinity found three distinct surface water types, allowing for diagnosis of whether observed changes were spatial or temporal. The 2018 EXPORTS field deployment is among the most comprehensive biological pump studies ever conducted. A second deployment to the North Atlantic Ocean occurred in spring 2021, which will be followed by focused work on data synthesis and modeling using the entire EXPORTS data set.