Bogomolni Andrea L.

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Bogomolni
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Andrea L.
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  • Technical Report
    Gulf of Maine seals - populations, problems and priorities
    (Woods Hole Oceanographic Institution, 2010-06) Bogomolni, Andrea L. ; Early, Greg A. ; Matassa, Keith A. ; Nichols, Owen C. ; Sette, Lisa
    As pinniped populations shift and change along the northeast U.S. and Canadian coastline, so too do the interests and issues of regional residents, scientists and stakeholders. In May 2009 the Woods Hole Oceanographic Institution (WHOI) sponsored a meeting resulting in recommendations in three key areas regarding pinnipeds: population dynamics, human interaction and disease/health. The population group recommended: developing long-term surveys over all seasons and geographic ranges, coordinating sampling efforts for dietary research, refining correction factors for survey results, increasing documentation of fishery interactions and developing means of funding. The human interactions group recommended: addressing marine debris, developing survey, reporting and retrieval protocols for discarded fishing gear, studying impact of and expanding education and outreach for commercial seal watching, researching methods to deter depredation from fishing gear, streamlining the permitting processes for acoustic deterrent and gear modification research, and increasing cooperative research and outreach to the fishing community. The health and disease working group recommended: establishing baseline health indicators, addressing priority disease concerns, creating a pool of resources for standardized analysis of normal and unusual health event monitoring, determining standard health baselines for release, establishing a health consortium, improving communication along the coastline and establishing long term funding and ongoing collaboration.
  • Article
    Marine vertebrate zoonoses : an overview of the DAO Special Issue
    (Inter-Research, 2008-08-19) Moore, Michael J. ; Gast, Rebecca J. ; Bogomolni, Andrea L.
    The role of marine birds, mammals, turtles and fish as vectors of infectious agents of potential risk to humans can be examined from a variety of perspectives. The studies in this DAO Special include a broad survey of multiple agents and species, a sequencing study of Giardia intestinalis haplotypes known to be pathogenic to humans, an assessment of risks to humans working with marine mammals, a source tracking study using E. coli ribotypes, studies of regional Salmonella and Brucella epizootiology, a serology survey and a case report of a herpes simplex infection in a dolphin. Additionally, a recently published study (Venn-Watson et al. 2008; Dis Aquat Org 79:87–93) classifying pure cultures of bacteria from a captive dolphin colony also pertains to this theme. These studies raise the following questions: whether the presence of zoonotic agents in marine vertebrates represents a risk to other marine vertebrates, humans, or both; what are the routes by which these marine vertebrate zoonotic infections are acquired and circulated in the marine ecosystem; to what degree are such agents subclinical versus causes of overt disease in marine vertebrates; what are the subsets of the human population most likely to be affected by such infections; and which human health preventive measures would seem reasonable?
  • Article
    Compositional discrimination of decompression and decomposition gas bubbles in bycaught seals and dolphins
    (Public Library of Science, 2013-12-19) Bernaldo de Quirós, Yara ; Seewald, Jeffrey S. ; Sylva, Sean P. ; Greer, William ; Niemeyer, Misty E. ; Bogomolni, Andrea L. ; Moore, Michael J.
    Gas bubbles in marine mammals entangled and drowned in gillnets have been previously described by computed tomography, gross examination and histopathology. The absence of bacteria or autolytic changes in the tissues of those animals suggested that the gas was produced peri- or post-mortem by a fast decompression, probably by quickly hauling animals entangled in the net at depth to the surface. Gas composition analysis and gas scoring are two new diagnostic tools available to distinguish gas embolisms from putrefaction gases. With this goal, these methods have been successfully applied to pathological studies of marine mammals. In this study, we characterized the flux and composition of the gas bubbles from bycaught marine mammals in anchored sink gillnets and bottom otter trawls. We compared these data with marine mammals stranded on Cape Cod, MA, USA. Fresh animals or with moderate decomposition (decomposition scores of 2 and 3) were prioritized. Results showed that bycaught animals presented with significantly higher gas scores than stranded animals. Gas composition analyses indicate that gas was formed by decompression, confirming the decompression hypothesis.
  • Article
    Mortality trends of stranded marine mammals on Cape Cod and southeastern Massachusetts, USA, 2000 to 2006
    (Inter-Research, 2010-01-25) Bogomolni, Andrea L. ; Pugliares, Katie R. ; Sharp, Sarah M. ; Patchett, Kristen ; Harry, Charles T. ; LaRocque, Jane M. ; Touhey, Kathleen M. ; Moore, Michael J.
    To understand the cause of death of 405 marine mammals stranded on Cape Cod and southeastern Massachusetts between 2000 and 2006, a system for coding final diagnosis was developed and categorized as (1) disease, (2) human interaction, (3) mass-stranded with no significant findings, (4) single-stranded with no significant findings, (5) rock and/or sand ingestion, (6) predatory attack, (7) failure to thrive or dependent calf or pup, or (8) other. The cause of death for 91 animals could not be determined. For the 314 animals that could be assigned a cause of death, gross and histological pathology results and ancillary testing indicated that disease was the leading cause of mortality in the region, affecting 116/314 (37%) of cases. Human interaction, including harassment, entanglement, and vessel collision, fatally affected 31/314 (10%) of all animals. Human interaction accounted for 13/29 (45%) of all determined gray seal Halichoerus grypus mortalities. Mass strandings were most likely to occur in northeastern Cape Cod Bay; 97/106 (92%) of mass stranded animals necropsied presented with no significant pathological findings. Mass strandings were the leading cause of death in 3 of the 4 small cetacean species: 46/67 (69%) of Atlantic white-sided dolphin Lagenorhynchus acutus, 15/21 (71%) of long-finned pilot whale Globicephala melas, and 33/54 (61%) of short-beaked common dolphin Delphinus delphis. These baseline data are critical for understanding marine mammal population health and mortality trends, which in turn have significant conservation and management implications. They not only afford a better retrospective analysis of strandings, but ultimately have application for improving current and future response to live animal stranding.
  • Article
    Molecular characterization of Giardia intestinalis haplotypes in marine animals : variation and zoonotic potential
    (Inter-Research, 2008-08-19) Lasek-Nesselquist, Erica ; Bogomolni, Andrea L. ; Gast, Rebecca J. ; Mark Welch, David B. ; Ellis, Julie C. ; Sogin, Mitchell L. ; Moore, Michael J.
    Giardia intestinalis is a microbial eukaryotic parasite that causes diarrheal disease in humans and other vertebrates worldwide. The negative effect on quality of life and economics caused by G. intestinalis may be increased by its potential status as a zoonosis, or a disease that can be transmitted from animals to humans. The zoonotic potential of G. intestinalis has been implied for over 2 decades, with human-infecting genotypes (belonging to the 2 major subgroups, Assemblages A and B) occurring in wildlife and domesticated animals. There are recent reports of G. intestinalis in shellfish, seals, sea lions and whales, suggesting that marine animals are also potential reservoirs of human disease. However, the prevalence, genetic diversity and effect of G. intestinalis in marine environments and the role that marine animals play in transmission of this parasite to humans are relatively unexplored. Here, we provide the first thorough molecular characterization of G. intestinalis in marine vertebrates. Using a multi-locus sequencing approach, we identify human-infecting G. intestinalis haplotypes of both Assemblages A and B in the fecal material of dolphins, porpoises, seals, herring gulls Larus argentatus, common eiders Somateria mollissima and a thresher shark Alopias vulpinus. Our results indicate that G. intestinalis is prevalent in marine ecosystems, and a wide range of marine hosts capable of harboring zoonotic forms of this parasite exist. The presence of G. intestinalis in marine ecosystems raises concerns about how this disease might be transmitted among different host species.
  • Technical Report
    Gulf of Maine seals - fisheries interactions and integrated research : final report
    (Woods Hole Oceanographic Institution, 2011-10) Nichols, Owen C. ; Bogomolni, Andrea L. ; Bradfield, Elizabeth C. ; Early, Greg A. ; Sette, Lisa ; Wood, Stephanie
    The 2011 meeting, “Gulf of Maine Seals: Fisheries Interactions and Integrated Research”, held at the Provincetown Center for Coastal Studies (PCCS), featured posters and oral presentations as well as a series of discussion groups. This meeting was a follow up to the 2009 meeting, “Gulf of Maine Seals - Populations, Problems and Priorities”, held at the Woods Hole Oceanographic Institution (WHOI) (Bogomolni et al. 2010). At the conclusion of the 2009 meeting, attendees emphasized the need to improve communication, to obtain funding for long term research, to continue meeting on a regular basis, to increase data and data sharing, and to support cross cutting research between the meeting’s three primary topic areas: disease and health; human and fishery interactions; and population biology. The overarching goals of the 2011 meeting were to discuss and share work to date, present some of the tools developed since the 2009 meeting, and outline goals for future integrated research. One of the tools presented within the framework of cross-cutting research areas and integrative research was the development of a sightings database and website for uniquely identifiable (unique pelage, scars, lesions, tagged, branded, marked, etc.) animals. The practicality of this tool as a means to increase communication was discussed. Additionally, seal/fisheries interactions throughout the Gulf of Maine, Cape Cod and waters off of the northeast U.S. have continued to concern stakeholders since the 2009 meeting. The urgency of documenting, understanding and mitigating these interactions has become more apparent. Therefore, the focus of the 2011 Provincetown meeting was on fisheries interaction and related topics raised at the last 2009 workshop and in the meetings with Cape Cod fishermen described below. For the purposes of this report, 'fisheries interaction' can be direct/operational (e.g. depredation, when seals remove fish from gear; or entanglement/bycatch, when seals are unintentionally captured), or indirect/ecological (competition, displacement or other large-scale interactions between seals and fisheries). Stakeholder concerns about fisheries interactions and recent increases in local seal abundance were rising prior to the 2009 meeting. In December of 2006, the Chatham-based Cape Cod Commercial Hook Fishermen’s Association (CCCHFA) took the lead in organizing a meeting entitled, “Structuring a Novel Research Team to Define and Assess the Impact of Human/Seal Interactions on Cape Cod/Gulf of Maine through Ecosystem-Based Analysis”. Participants included fishermen, policy makers, environmental organizations and researchers aiming to develop a unique partnership to study the New England seal population. The goal of this meeting was to create a research team that would define the ecological role of seals in Cape Cod waters by studying population dynamics, behavior, and health. This meeting resulted in a successful partnership, financially aided by the International Fund for Animal Welfare (IFAW), between fishermen and seal researchers. A cost-effective cooperative research agreement was reached whereby seal researchers were provided boat transport around the Chatham and Monomoy areas by local fishermen. This agreement allowed students and researchers to gain access to areas off of Chatham that would otherwise not have been accessible. It also supported a collaborative effort to increase understanding and communication between stakeholders. In addition to the CCCHFA-led meeting in 2006, a series of informal meetings have been held on Cape Cod between commercial and recreational fishermen and marine scientists. This work was initially funded by the Cape Cod Five Cents Savings Bank Charitable Foundation. Owen Nichols and Lisa Sette (PCCS) have held individual meetings with commercial fishermen in Chatham, Orleans, and Provincetown, and recreational fishermen, outfitters, and associations throughout the Outer Cape. These individual meetings were followed by larger group meetings in Eastham and Chatham in 2010 and 2011, and more are planned for 2012. Attendees included commercial and recreational fishermen and scientists, and discussion topics included observed seal/fishery interactions and potential collaborative research projects. The goal of the meetings is to develop a working group composed of members of the fishing and scientific communities with expertise in marine mammal and fisheries ecology. The above meetings laid the foundation for the 2011 meeting, during which members of the scientific and fishing communities gathered to focus on fisheries interactions and integrated research techniques to quantify and mitigate interactions. Several invited presentations were given, some of which were scheduled (Appendix A) with selected abstracts provided (Appendix B), and some of which were delivered on an ad hoc basis upon request from organizers or attendees (see Appendix F for edited transcripts of presentations). In order to ensure that the fishing community had a distinct voice, a forum was included in the agenda, during which fishermen were encouraged to share their observations, experiences and concerns. Separately, moderated discussion groups focused specifically on fisheries interactions, tagging and tracking, and management issues. All four sessions, despite their specific foci, shared common themes such as the need for collaborative research involving both the scientific and fishing communities. Recommendations from the discussion groups and summaries from each session are listed on the following pages.
  • Article
    Victims or vectors : a survey of marine vertebrate zoonoses from coastal waters of the Northwest Atlantic
    (Inter-Research, 2008-08-19) Bogomolni, Andrea L. ; Gast, Rebecca J. ; Ellis, Julie C. ; Dennett, Mark R. ; Pugliares, Katie R. ; Lentell, Betty J. ; Moore, Michael J.
    Surveillance of zoonotic pathogens in marine birds and mammals in the Northwest Atlantic revealed a diversity of zoonotic agents. We found amplicons to sequences from Brucella spp., Leptospira spp., Giardia spp. and Cryptosporidium spp. in both marine mammals and birds. Avian influenza was detected in a harp seal and a herring gull. Routine aerobic and anaerobic culture showed a broad range of bacteria resistant to multiple antibiotics. Of 1460 isolates, 797 were tested for resistance, and 468 were resistant to one or more anti-microbials. 73% (341/468) were resistant to 1–4 drugs and 27% (128/468) resistant to 5–13 drugs. The high prevalence of resistance suggests that many of these isolates could have been acquired from medical and agricultural sources and inter-microbial gene transfer. Combining birds and mammals, 45% (63/141) of stranded and 8% (2/26) of by-caught animals in this study exhibited histopathological and/or gross pathological findings associated with the presence of these pathogens. Our findings indicate that marine mammals and birds in the Northwest Atlantic are reservoirs for potentially zoonotic pathogens, which they may transmit to beachgoers, fishermen and wildlife health personnel. Conversely, zoonotic pathogens found in marine vertebrates may have been acquired via contamination of coastal waters by sewage, run-off and agricultural and medical waste. In either case these animals are not limited by political boundaries and are therefore important indicators of regional and global ocean health.
  • Article
    An assessment of temporal, spatial and taxonomic trends in harmful algal toxin exposure in stranded marine mammals from the US New England coast
    (Public Library of Science, 2021-01-06) Fire, Spencer E. ; Bogomolni, Andrea L. ; DiGiovanni, Robert A., Jr. ; Early, Greg A. ; Leighfield, Tod A. ; Matassa, Keith A. ; Miller, Glenn A. ; Moore, Kathleen M. T. ; Moore, Michael J. ; Niemeyer, Misty E. ; Pugliares, Katie R. ; Wang, Zhihong ; Wenzel, Frederick W.
    Despite a long-documented history of severe harmful algal blooms (HABs) in New England coastal waters, corresponding HAB-associated marine mammal mortality events in this region are far less frequent or severe relative to other regions where HABs are common. This long-term survey of the HAB toxins saxitoxin (STX) and domoic acid (DA) demonstrates significant and widespread exposure of these toxins in New England marine mammals, across multiple geographic, temporal and taxonomic groups. Overall, 19% of the 458 animals tested positive for one or more toxins, with 15% and 7% testing positive for STX and DA, respectively. 74% of the 23 different species analyzed demonstrated evidence of toxin exposure. STX was most prevalent in Maine coastal waters, most frequently detected in common dolphins (Delphinus delphis), and most often detected during July and October. DA was most prevalent in animals sampled in offshore locations and in bycaught animals, and most frequently detected in mysticetes, with humpback whales (Megaptera novaeangliae) testing positive at the highest rates. Feces and urine appeared to be the sample matrices most useful for determining the presence of toxins in an exposed animal, with feces samples having the highest concentrations of STX or DA. No relationship was found between the bloom season of toxin-producing phytoplankton and toxin detection rates, however STX was more likely to be present in July and October. No relationship between marine mammal dietary preference and frequency of toxin detection was observed. These findings are an important part of a framework for assessing future marine mammal morbidity and mortality events, as well as monitoring ecosystem health using marine mammals as sentinel organisms for predicting coastal ocean changes.
  • Technical Report
    Marine mammal necropsy : an introductory guide for stranding responders and field biologists
    (Woods Hole Oceanographic Institution, 2007-09) Pugliares, Katie R. ; Bogomolni, Andrea L. ; Touhey, Kathleen M. ; Herzig, Sarah M. ; Harry, Charles T. ; Moore, Michael J.
    This necropsy manual is designed to establish a base level of profiency in marine mammal necropsy techniques. It is written for stranding network members who do not have a formal pathobiological training and have limited knowledge of anatomy. Anatomical and pathological jargon has been kept to a minimum. This manual is divided into six sections: preliminary data, sample management, pinniped, small ceetacean, large whale (at sea and on the beach), and multiple appendices (A-H). A well-illustrated, carefully written gross necropsy report is essential to an adequate diagnostic investigation. Gross reports with significant detail and description tend to engender useful histopathological findings. A sample blank gross necropsy report and guidelines in writing a report can be found in Appendices A & B. Overall, this guide aims to lead the enquiring mind through the necessary steps to produce such reports. While this manual focuses on process and interpretation, it is important to understand that the gross necropsy is primarily about making detailed, descriptive observations without bias as to possible etiology. The necropsy should establish a list of differential diagnoses and the sampling be directed by an attempt to discriminate between them.
  • Article
    Discrimination between bycatch and other causes of cetacean and pinniped stranding
    (Inter-Research, 2018-01-31) Bernaldo de Quirós, Yara ; Hartwick, Meghan ; Rotstein, David S. ; Garner, Michael M. ; Bogomolni, Andrea L. ; Greer, William ; Niemeyer, Misty E. ; Early, Greg A. ; Wenzel, Frederick W. ; Moore, Michael J.
    The challenge of identifying cause of death in discarded bycaught marine mammals stems from a combination of the non-specific nature of the lesions of drowning, the complex physiologic adaptations unique to breath-holding marine mammals, lack of case histories, and the diverse nature of fishing gear. While no pathognomonic lesions are recognized, signs of acute external entanglement, bulging or reddened eyes, recently ingested gastric contents, pulmonary changes, and decompression-associated gas bubbles have been identified in the condition of peracute underwater entrapment (PUE) syndrome in previous studies of marine mammals. We reviewed the gross necropsy and histopathology reports of 36 cetaceans and pinnipeds including 20 directly observed bycaught and 16 live stranded animals that were euthanized between 2005 and 2011 for lesions consistent with PUE. We identified 5 criteria which present at significantly higher rates in bycaught marine mammals: external signs of acute entanglement, red or bulging eyes, recently ingested gastric contents, multi-organ congestion, and disseminated gas bubbles detected grossly during the necropsy and histologically. In contrast, froth in the trachea or primary bronchi, and lung changes (i.e. wet, heavy, froth, edema, congestion, and hemorrhage) were poor indicators of PUE. This is the first study that provides insight into the different published parameters for PUE in bycatch. For regions frequently confronted by stranded marine mammals with non-specific lesions, this could potentially aid in the investigation and quantification of marine fisheries interactions.
  • Article
    Google haul out : Earth observation imagery and digital aerial surveys in coastal wildlife management and abundance estimation
    (Oxford University Press, 2017-06-14) Moxley, Jerry ; Bogomolni, Andrea L. ; Hammill, Mike O. ; Moore, Kathleen M. T. ; Polito, Michael J. ; Sette, Lisa ; Sharp, W. Brian ; Waring, Gordon T. ; Gilbert, James R. ; Halpin, Patrick N. ; Johnston, David W.
    As the sampling frequency and resolution of Earth observation imagery increase, there are growing opportunities for novel applications in population monitoring. New methods are required to apply established analytical approaches to data collected from new observation platforms (e.g., satellites and unmanned aerial vehicles). Here, we present a method that estimates regional seasonal abundances for an understudied and growing population of gray seals (Halichoerus grypus) in southeastern Massachusetts, using opportunistic observations in Google Earth imagery. Abundance estimates are derived from digital aerial survey counts by adapting established correction-based analyses with telemetry behavioral observation to quantify survey biases. The result is a first regional understanding of gray seal abundance in the northeast US through opportunistic Earth observation imagery and repurposed animal telemetry data. As species observation data from Earth observation imagery become more ubiquitous, such methods provide a robust, adaptable, and cost-effective solution to monitoring animal colonies and understanding species abundances.
  • Technical Report
    Seals and ecosystem health : meeting report of the Northwest Atlantic Seal Research Consortium
    (Woods Hole Oceanographic Institution, 2015-05) Bass, Anna L. ; Bogomolni, Andrea L. ; Early, Greg A. ; Nichols, Owen C. ; Patchett, Kristen
    On May 1 and 2, 2015, over 75 people attended the Northwest Atlantic Seal Research Consortium's first official biennial two day scientific meeting, "Seals and Ecosystem Health", at Salem State University in Salem, Massachusetts. The focus of the meeting was addressed by two keynote presentations: "Seals and Ecosystem Health" and "Marine mammals and ecosystem functioning: what can recovering seal populations teach us?" The first day of the meeting featured 16 oral and two poster presentations, covering a diverse range of topics highlighting the important underlying concepts, data gaps and future directions. Following the theme of the meeting, attendees discussed the nature of ecosystems, acknowledging the complex and often cryptic interactions between components, with cumulative and synergistic effects on animals and their environment. As our understanding of the ecological role of seals in the Northwest Atlantic grows, the cumulative interactions increase our recognition of seals as sentinels of ecosystem health. Meeting presentations highlighted the value of existing data and ongoing research efforts, including long-term population monitoring, tagging and photo-identification, stranding response, and rehabilitation facilities. The importance of observational effort was recognized as a critical component in detecting mortality events, documenting population processes in remote locations and cryptic species interactions. Research priorities identified included development of molecular tools for study of diet and disease, population dynamics studies (demographics and trends), telemetry-based investigations of spatiotemporal distribution, and model- and field-based ecosystem-level studies. Several of the presentations and the panel discussion, "Addressing Perception vs. Reality: How data (or lack of data) affects public perceptions and management decisions," highlighted the diverse and evolving perspectives with which society views seals, perspectives that are often biased by the backgrounds of individual humans. Diverse opinions necessitate engagement of stakeholders and the public, and societal objectives need to be defined in order to effect science-based natural resource management at an ecosystem level. At the closing of the meeting, recommendations from the panel discussion and for the overall goals of NASRC were discussed.
  • Article
    Fatally entangled right whales can die extremely slowly
    (IEEE, 2006-09) Moore, Michael J. ; Bogomolni, Andrea L. ; Bowman, Robert ; Hamilton, Philip K. ; Harry, Charles T. ; Knowlton, Amy R. ; Landry, Scott ; Rotstein, David S. ; Touhey, Kathleen M.
    Unlike smaller marine mammals that lack the mass and power to break free from serious entanglements in fixed fishing gear, right whales can do so, but they are not always rope free. The remaining rope can gradually constrict one or more body parts and the resulting debilitation and ultimate death can take many months. Thus the practices that lead to these mortalities need to be viewed not only as a conflict between the cultural and socioeconomic value of a fishery versus a potential species extinction process, but also in terms of an extreme animal welfare issue.
  • Article
    Emerging zoonoses in marine mammals and seabirds of the Northeast U.S.
    (IEEE, 2006-09) Bogomolni, Andrea L. ; Ellis, Julie C. ; Gast, Rebecca J. ; Harris, B. ; Pokras, M. ; Touhey, Kathleen M. ; Moore, Michael J.
    In the Northeast United States, marine vertebrates come into contact with each other and with humans through a variety of mechanisms which allow for the transfer of pathogens from one taxa to another. Though there are many ways in which humans come into contact with infectious agents, there is an inadequate understanding of the prevalence of clinical and sub-clinical zoonotic agents in the marine vertebrates of the Northeast United States. We are strengthening our understanding of the issue by targeting marine mammals and seabirds of New England and screening normal and diseased individuals of this ecosystem to establish a baseline prevalence of zoonotic agents in this ecosystem. Samples from stranded, bycaught and wild marine mammals and seabirds have been found to be positive for our screened pathogens. Most notable are the diseases found in bycaught marine mammals as well as wild caught individuals. Our current focus is specifically on influenza A and B, brucellosis, leptospirosis, Giardia and Cryptosporidium. Samples for virology, bacterial screening and molecular screening are being archived and analyzed as practical. Our goal is to create an optimized PCR-based molecular detection protocol for the above agents.
  • Article
    Prevalence of influenza A virus in live-captured North Atlantic gray seals : a possible wild reservoir
    (Nature Publishing Group, 2016-08-03) Puryear, Wendy Blay ; Keogh, Mandy ; Hill, Nichola ; Moxley, Jerry ; Josephson, Elizabeth ; Davis, Kimberly Ryan ; Bandoro, Christopher ; Lidgard, Damian ; Bogomolni, Andrea L. ; Levin, Milton ; Lang, Shelley ; Hammill, Michael ; Bowen, Don ; Johnston, David W. ; Romano, Tracy ; Waring, Gordon T. ; Runstadler, Jonathan
    Influenza A virus (IAV) has been associated with multiple unusual mortality events (UMEs) in North Atlantic pinnipeds, frequently attributed to spillover of virus from wild-bird reservoirs. To determine if endemic infection persists outside of UMEs, we undertook a multiyear investigation of IAV in healthy, live-captured Northwest Atlantic gray seals (Halichoerus grypus). From 2013 to 2015, we sampled 345 pups and 57 adults from Cape Cod, MA, USA and Nova Scotia, Canada consistently detecting IAV infection across all groups. There was an overall viral prevalence of 9.0% (95% confidence interval (CI): 6.4%–12.5%) in weaned pups and 5.3% (CI: 1.2%–14.6%) in adults, with seroprevalences of 19.3% (CI: 15.0%–24.5%) and 50% (CI: 33.7%–66.4%), respectively. Positive sera showed a broad reactivity to diverse influenza subtypes. IAV status did not correlate with measures of animal health nor impact animal movement or foraging. This study demonstrated that Northwest Atlantic gray seals are both permissive to and tolerant of diverse IAV, possibly representing an endemically infected wild reservoir population.
  • Article
    Development of a one-step duplex RT-qPCR for the quantification of phocine distemper virus
    (Wildlife Disease Association, 2015-04) Bogomolni, Andrea L. ; Frasca, Salvatore ; Matassa, Keith A. ; Nielsen, Ole ; Rogers, Kara ; De Guise, Sylvain
    Worldwide, stranded marine mammals and the network personnel who respond to marine mammal mortality have provided much of the information regarding marine morbillivirus infections. An assay to determine the amount of virus present in tissue samples would be useful to assist in routine surveying of animal health and for monitoring large-scale die-off events. False negatives from poor-quality samples prevent determination of the true extent of infection, while only small amounts of tissue samples or archived RNA may be available at the time of collection for future retrospective analysis. We developed a one-step duplex real-time reverse transcriptase-quantitative-PCR assay (RT-qPCR) based on Taqman probe technology to quantify phocine distemper virus (PDV) isolated from an outbreak in harbor (Phoca vitulina concolor) and gray seals (Halichoerus grypus) along the northeast US coast in 2006. The glyceraldehyde-3-phosphate-dehydrogenase (GAPDH) gene was selected to assess RNA quality. This duplex assay is specific for PDV and sensitive through a range of 100 to 109 copies ds-plasmid DNA. For the GAPDH target, the reaction in duplex amplified 100 to 109 copies of ds-plasmid DNA and was detectable in multiple seal species. This assay reduced the likelihood of false negative results due to degradation of tissues and well-to-well variability while providing sensitive and specific detection of PDV, which would be applicable in molecular epidemiologic studies and pathogen detection in field and laboratory investigations involving a variety of seal species.
  • Working Paper
    Report of large whale restraint workshop
    ( 2006-07-27) Bogomolni, Andrea L. ; Campbell-Malone, Regina ; Lysiak, Nadine S. J. ; Moore, Michael J.
    A number of large cetacean species are seriously injured and killed by entanglement in fishing gear used in the waters off the eastern United States and Canada. Entanglement most frequently involves rope or lines wrapped around the head, the flippers, body, in the mouth, around the tail flukes or any combination of the aforementioned body parts. Consequences of entanglement are particularly grave for North Atlantic right whales, which currently number about 300 whales and are declining due, in part, to this entanglement-related mortality. Right whales are frequently intractable and are very difficult and potentially unsafe to work with while attempting to disentangle the animal. Modifications and technological advances are needed to control, restrain and overall increase the success rate at which right whales are able to be cut free from entangling gear.
  • Article
    Marine mammal skin microbiotas are influenced by host phylogeny
    (The Royal Society, 2020-05-20) Apprill, Amy ; Miller, Carolyn A. ; Van Cise, Amy M. ; U'Ren, Jana M. ; Leslie, Matthew S. ; Weber, Laura ; Baird, Robin W. ; Robbins, Jooke ; Landry, Scott ; Bogomolni, Andrea L. ; Waring, Gordon T.
    Skin-associated microorganisms have been shown to play a role in immune function and disease of humans, but are understudied in marine mammals, a diverse animal group that serve as sentinels of ocean health. We examined the microbiota associated with 75 epidermal samples opportunistically collected from nine species within four marine mammal families, including: Balaenopteridae (sei and fin whales), Phocidae (harbour seal), Physeteridae (sperm whales) and Delphinidae (bottlenose dolphins, pantropical spotted dolphins, rough-toothed dolphins, short-finned pilot whales and melon-headed whales). The skin was sampled from free-ranging animals in Hawai‘i (Pacific Ocean) and off the east coast of the United States (Atlantic Ocean), and the composition of the bacterial community was examined using the sequencing of partial small subunit (SSU) ribosomal RNA genes. Skin microbiotas were significantly different among host species and taxonomic families, and microbial community distance was positively correlated with mitochondrial-based host genetic divergence. The oceanic location could play a role in skin microbiota variation, but skin from species sampled in both locations is necessary to determine this influence. These data suggest that a phylosymbiotic relationship may exist between microbiota and their marine mammal hosts, potentially providing specific health and immune-related functions that contribute to the success of these animals in diverse ocean ecosystems.