Science Data Sets

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  • Dataset
    1-D vertical mixing/biogeochemical Regional Ocean Modeling System (ROMS) output of October 2010 - March 2011 of the Amundsen Sea Polynya, modeled at twelve bloom stations.
    (Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2020-07-24) Yager, Patricia L. ; Sherrell, Robert M.
    1-D vertical mixing/biogeochemical Regional Ocean Modeling System (ROMS) output of October 2010 - March 2011 of the Amundsen Sea Polynya, modeled at twelve bloom stations. Data are 3-hourly averages, and saved in NetCDF files. In the NetCDF files, data are distributed over a 6x6 grid with 30 depths (ranging from the surface down to 210 m, with higher resolution near the surface). ocean_avg.nc files are the standard model output, while files named ocean_avg_sensitivity_lowWW.nc are from runs using a lower winter water initial dissolved iron concentration. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/765252
  • Dataset
    1-decibar binned CTD data from 103 stations collected during R/V Roger Revelle cruise RR2004 along the 150W meridian from 30S to 60S
    (Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2023-09-25) Balch, William M. ; McGillicuddy, Dennis J. ; Oliver, Hilde
    This dataset includes the processed CTD data from 103 stations collected during R/V Roger Revelle cruise RR2004, which sailed from Honolulu, Hawaii on December 26, 2020 to the Southern Ocean and returned to Honolulu on February 23, 2021. Data have been binned by pressure into 1-decibar bins. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/908342
  • Dataset
    14C dates from core PC1 collected from T Lake, Palau in September 2013
    (Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2019-06-24) Sachs, Julian P. ; Dawson, Michael N.
    14C dates from core PC1 collected from T Lake, Palau in September 2013 using a Colinvaux‐Vohnout Livingstone‐type rod‐operated piston corer. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/771658
  • Dataset
    15NO3 data, acetylene reduction assays, and NH4+ diffusion average summaries from samples collected in Little Lagoon, Alabama from 2012 to 2013.
    (Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2019-03-15) Mortazavi, Behzad ; Burnett, William C.
    15NO3 data, acetylene reduction assays, and NH4+ diffusion average summaries from samples collected in Little Lagoon, Alabama from 2012 to 2013. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/723935
  • Dataset
    15NO3 uptake measured during experimental cycles in 24-hour in situ incubations on R/V Melville cruise MV1008 in the Costa Rica Dome in 2010 (CRD FLUZiE project)
    (Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2019-12-11) Landry, Michael R.
    15NO3 uptake rates measured during experimental cycles on the MV1008 cruise in the Costa Rica Dome (CRD) region of the Eastern Tropical Pacific Ocean. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/516108
  • Dataset
    16S gene sequencing of microbial communities in South China Sea sediments from January to March 2014
    (Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2021-05-20) Colwell, Frederick ; Thurber, Andrew
    16S gene sequencing of microbial communities in South China Sea sediments from January to March 2014. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/748024
  • Dataset
    16S rRNA and genomes of particle associated taxa
    (Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2021-04-26) Cordero, Otto X.
    This dataset includes National Center for Biotechnology Information (NCBI) accession numbers and related information for 16S rRNA and genomes of particle associated taxa. Sequences can be found in NCBI under BioProject PRJNA478695. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/849357
  • Dataset
    16S rRNA gene (from DNA) from samples collected on cruise Chikyu-331 in the Okinawa Trough, Japan from September to October 2010
    (Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2019-11-22) House, Christopher ; Brandt, Leah
    The purpose of this dataset was to investigate taxonomic changes via the 16S rRNA gene from extractable DNA across 45 meters of recovered core. The temperature gradient in this section of the dynamic Iheya North Hydrothermal system was estimated to be ~3C/m. The interval transitions sharply from low-temperature marine mud to hydrothermally altered clay. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/780926
  • Dataset
    16S rRNA gene (from RNA) from samples collected on cruise Chikyu-331 in the Okinawa Trough, Japan from September to October 2010
    (Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2019-11-22) House, Christopher ; Brandt, Leah
    RNA extractions were attempted from sediments at Sites C0014 and C0017 to selectively investigate the active microbial populations at these sites. This study was conducted to supplement the gene-based and metagenomic studies. However, the results from sequenced reverse transcribe 16S rRNA demonstrate the sensitivity of extraction and amplification to external nucleic acids and attest to the challenges in working with low biomass environmental samples. Inconsistencies between primersets and replicates make conclusions about the results of this RNA study extremely tenuous. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/781114
  • Dataset
    16S rRNA sequences from subsurface microbial communities (Blackwood Sinkhole)
    (Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2021-08-24) Labonté, Jessica M. ; van Hengstum, Pete
    This dataset includes information about 16S rRNA sequences from subsurface microbial communities at Blackwood Sinkhole. Samples were collected in July 2018. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/847824
  • Dataset
    16S V4 rRNA gene tag sequences from reef seawater samples collected in the Florida Keys and the U.S. Virgin Islands in 2019-2020
    (Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2021-08-24) Apprill, Amy ; Ma, Lei
    This dataset describes 16S V4 rRNA gene tag sequences from reef seawater. Samples were collected from three reefs in U.S. Virgin Islands and three reefs in Florida Reef tract. Sequence data can be found in the NCBI SRA database under the bioproject PRJNA733652. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/858459
  • Dataset
    18S rRNA amplicon sequencing of microbial eukaryotes from the Mid-Cayman Rise acquired Jan-Feb, 2020
    (Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2023-11-06) Hu, Sarah K. ; Huber, Julie
    Single-celled microbial eukaryotes inhabit deep-sea hydrothermal vent environments and play critical ecological roles in the vent-associated microbial food web. 18S rRNA amplicon sequencing of diffuse venting fluids from two geochemically-distinct hydrothermal vent fields was applied to investigate community diversity patterns among protistan assemblages. Piccard and Von Damm vent fields are situated 20 km apart at the Mid-Cayman Rise in the Caribbean Sea. We describe species diversity patterns with respect to hydrothermal vent field and sample type, identify putative vent endemic microbial eukaryotes, and test how vent fluid geochemistry may influence microbial community diversity. Individual vent fields supported distinct and highly diverse assemblages of protists that included potentially endemic or novel vent-associated strains. This data adds to our growing knowledge of the biogeography of deep-sea microbial eukaryotes. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/914399
  • Dataset
    19 Metagenomes and 7 metatranscriptomes from sediment samples collected offshore of San Francisco, Califronia, USA
    (Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2023-05-08) Dekas, Anne E.
    This dataset includes metadata and NCBI accession numbers describing 19 metagenomes and 7 metatranscriptomes from sediment samples collected offshore of San Francisco, Califronia, USA in March 2017 on R/V Oceanus cruise OC1703A. The generation of these data was completed on May 7, 2021. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/862731
  • Dataset
    1995 and 1996 fairly raw chlorophyll data, Georges Bank collected from the GLOBEC Broadscale cruises from the Gulf of Maine and Georges Bank (GB project)
    (Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2019-01-30) Mountain, David ; Taylor, Maureen
    Raw Extracted Chlorophyll Data from Broadscale CTD stations in the Gulf of Maine, 1995 and 1996. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/2298
  • Dataset
    1995 and 1996 temperature, salinity and fluorescence data, GLOBEC Georges Bank Broadscale cruises from the Gulf of Maine and Georges Bank (GB project)
    (Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2019-01-30) Mountain, David ; Taylor, Maureen
    1995 and 1996 temperature, salinity and fluorescence data, GLOBEC Georges Bank Broadscale cruises from the Gulf of Maine and Georges Bank For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/2299
  • Dataset
    1B: Bioavailability of dissolved organic carbon produced by Thalassiosira weissflogii grown under different pCO2 and temperature conditions from UCSB Marine Science Institute Passow Lab from 2009 to 2010 (OA - Effects of High CO2 project)
    (Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2020-01-24) Passow, Uta ; Brzezinski, Mark A. ; Carlson, Craig
    Bioavailability of dissolved organic carbon produced by Thalassiosira weissflogii grown under different pCO2 and temperature conditions from UCSB Marine Science Institute Passow Lab from 2009 to 2010. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/471701
  • Dataset
    2006 labeled IFCB images
    ( 2006) Sosik, Heidi M. ; Peacock, Emily E. ; Brownlee, Emily F.
  • Dataset
    2007 labeled IFCB images
    ( 2007) Sosik, Heidi M. ; Peacock, Emily E. ; Brownlee, Emily F.
  • Dataset
    2008 labeled IFCB images
    ( 2008) Sosik, Heidi M. ; Peacock, Emily E. ; Brownlee, Emily F.
  • Dataset
    2009 labeled IFCB images
    ( 2009) Sosik, Heidi M. ; Peacock, Emily E. ; Brownlee, Emily F.