Ecosystems Center
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The Ecosystems Center carries out research in ecosystems that range from the Arctic to the Antarctic, from Brazil to Martha’s Vineyard. In the Alaskan Arctic, scientists study the effect of warmer temperatures on tundra, stream and lake ecosystems. On the Arctic rivers of Eurasia, they measure how freshwater discharge is changing as the climate warms. On the western Antarctic peninsula, research focuses on the responses of the marine coastal ecosystem to rapid climate warming. In the western Amazon in Brazil, researchers assess how much the clearing of tropical forests will change the amount of greenhouse gas released into the atmosphere, while on the island of Martha’s Vineyard, scientists used controlled burns to restore coastal ecosystems. In central Massachusetts and in Abisko, Sweden, soil warming experiments are conducted to assess the forest’s response to climate warming. In northeastern Massachusetts, scientists study how changes in rural land use and urban development affect the flow of nutrients and organic matter into New England estuaries. In Boston Harbor, they measure the transfer of nitrogen from sediments to the water column as the harbor recovers from decades of sewage addition.
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Browsing Ecosystems Center by Subject "Carbon cycle"
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ArticleAtmospheric and oceanographic forcing impact particle flux composition and carbon sequestration in the eastern Mediterranean Sea: a three-year time-series study in the deep Ierapetra Basin(Frontiers Media, 2021-02-25) Pedrosa-Pamies, Rut ; Parinos, Constantine ; Sanchez-Vidal, Anna ; Calafat, Antoni ; Canals, Miquel ; Velaoras, Dimitris ; Mihalopoulos, Nikolaos ; Kanakidou, Maria ; Lampadariou, Nikolaos ; Gogou, AlexandraSinking particles are a critical conduit for the export of organic material from surface waters to the deep ocean. Despite their importance in oceanic carbon cycling, little is known about the biotic composition and seasonal variability of sinking particles reaching abyssal depths. Herein, sinking particle flux data, collected in the deep Ierapetra Basin for a three-year period (June 2010 to June 2013), have been examined at the light of atmospheric and oceanographic parameters and main mass components (lithogenic, opal, carbonates, nitrogen, and organic carbon), stable isotopes of particulate organic carbon (POC) and source-specific lipid biomarkers. Our aim is to improve the current understanding of the dynamics of particle fluxes and the linkages between atmospheric dynamics and ocean biogeochemistry shaping the export of organic matter in the deep Eastern Mediterranean Sea. Overall, particle fluxes showed seasonality and interannual variability over the studied period. POC fluxes peaked in spring April–May 2012 (12.2 mg m−2 d−1) related with extreme atmospheric forcing. Summer export was approximately fourfold higher than mean wintertime, fall and springtime (except for the episodic event of spring 2012), fueling efficient organic carbon sequestration. Lipid biomarkers indicate a high relative contribution of natural and anthropogenic, marine- and land-derived POC during both spring (April–May) and summer (June–July) reaching the deep-sea floor. Moreover, our results highlight that both seasonal and episodic pulses are crucial for POC export, while the coupling of extreme weather events and atmospheric deposition can trigger the influx of both marine labile carbon and anthropogenic compounds to the deep Levantine Sea. Finally, the comparison of time series data of sinking particulate flux with the corresponding biogeochemical parameters data previously reported for surface sediment samples from the deep-sea shed light on the benthic–pelagic coupling in the study area. Thus, this study underscores that accounting the seasonal and episodic pulses of organic carbon into the deep sea is critical in modeling the depth and intensity of natural and anthropogenic POC sequestration, and for a better understanding of the global carbon cycle.
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PreprintChlorophyll fluorescence tracks seasonal variations of photosynthesis from leaf to canopy in a temperate forest( 2016-11) Yang, Hualei ; Yang, Xi ; Zhang, Yongguang ; Heskel, Mary ; Lu, Xiaoliang ; Munger, J. William ; Sun, Shucun ; Tang, JianwuAccurate estimation of terrestrial gross primary productivity (GPP) remains a challenge despite its importance in the global carbon cycle. Chlorophyll fluorescence (ChlF) has been recently adopted to understand photosynthesis and its response to the environment, particularly with remote sensing data. However, it remains unclear how ChlF and photosynthesis are linked at different spatial scales across the growing season. We examined seasonal relationships between ChlF and photosynthesis at the leaf, canopy, and ecosystem scales, and explored how leaf-level ChlF was linked with canopy-scale solar induced chlorophyll fluorescence (SIF) in a temperate deciduous forest at Harvard Forest, Massachusetts, USA. Our results show that ChlF captured the seasonal variations of photosynthesis with significant linear relationships between ChlF and photosynthesis across the growing season over different spatial scales (R2=0.73, 0.77 and 0.86 at leaf, canopy and satellite scales, respectively; p<0.0001). We developed a model to estimate GPP from the tower-based measurement of SIF and leaf-level ChlF parameters. The estimation of GPP from this model agreed well with flux tower observations of GPP (R2=0.68; p<0.0001), demonstrating the potential of SIF for modeling GPP. At the leaf scale, we found that leaf Fq’/Fm’, the fraction of absorbed photons that are used for photochemistry for a light adapted measurement from a pulse amplitude modulation fluorometer, was the best leaf fluorescence parameter to correlate with canopy-SIF yield (SIF/APAR, R2=0.79; p<0.0001). We also found that canopy-SIF and SIF-derived GPP (GPPSIF) were strongly correlated to leaf-level biochemistry and canopy structure, including chlorophyll content (R2=0.65 for canopy-GPPSIF and chlorophyll content; p<0.0001), leaf area index (LAI) (R2=0.35 for canopy-GPPSIF and LAI; p<0.0001), and normalized difference vegetation index (NDVI) (R2=0.36 for canopy-GPPSIF and NDVI; p<0.0001). Our results suggest that ChlF can be a powerful tool to track photosynthetic rates at leaf, canopy, and ecosystem scales.
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PreprintContributions of long-term research and time-series observations to marine ecology and biogeochemistry( 2008-05-02) Ducklow, Hugh W. ; Doney, Scott C. ; Steinberg, Deborah K.Time-series observations form a critical element of oceanography. New interdisciplinary efforts launched in the past two decades complement the few earlier, longer-running time series in building a better, though still poorly-resolved, picture of lower-frequency ocean variability, the climate processes driving it, and its implications for foodweb dynamics, carbon storage and climate feedbacks. Time-series also enlarge our understanding of ecological processes and are integral for improving models of physical-biogeochemical-ecological ocean dynamics. The major time-series observatories go well beyond simple monitoring of core ocean properties, although that important activity forms the critical center of all time-series efforts. Modern ocean time series have major process and experimental components, entrain ancillary programs and have integrated modeling programs for deriving better understanding of the observations and the changing, three-dimensional ocean in which the observatories are embedded.
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ArticleGlobal ocean sediment composition and burial flux in the deep sea(American Geophysical Union, 2021-03-21) Hayes, Christopher T. ; Costa, Kassandra M. ; Anderson, Robert F. ; Calvo, Eva ; Chase, Zanna ; Demina, Ludmila L. ; Dutay, Jean-Claude ; German, Christopher R. ; Heimbürger, Lars-Eric ; Jaccard, Samuel L. ; Jacobel, Allison W. ; Kohfeld, Karen E. ; Kravchishina, Marina ; Lippold, Jörg ; Mekik, Figen ; Missiaen, Lise ; Pavia, Frank ; Paytan, Adina ; Pedrosa-Pamies, Rut ; Petrova, Mariia V. ; Rahman, Shaily ; Robinson, Laura F. ; Roy-Barman, Matthieu ; Sanchez-Vidal, Anna ; Shiller, Alan M. ; Tagliabue, Alessandro ; Tessin, Allyson C. ; van Hulten, Marco ; Zhang, JingQuantitative knowledge about the burial of sedimentary components at the seafloor has wide-ranging implications in ocean science, from global climate to continental weathering. The use of 230Th-normalized fluxes reduces uncertainties that many prior studies faced by accounting for the effects of sediment redistribution by bottom currents and minimizing the impact of age model uncertainty. Here we employ a recently compiled global data set of 230Th-normalized fluxes with an updated database of seafloor surface sediment composition to derive atlases of the deep-sea burial flux of calcium carbonate, biogenic opal, total organic carbon (TOC), nonbiogenic material, iron, mercury, and excess barium (Baxs). The spatial patterns of major component burial are mainly consistent with prior work, but the new quantitative estimates allow evaluations of deep-sea budgets. Our integrated deep-sea burial fluxes are 136 Tg C/yr CaCO3, 153 Tg Si/yr opal, 20Tg C/yr TOC, 220 Mg Hg/yr, and 2.6 Tg Baxs/yr. This opal flux is roughly a factor of 2 increase over previous estimates, with important implications for the global Si cycle. Sedimentary Fe fluxes reflect a mixture of sources including lithogenic material, hydrothermal inputs and authigenic phases. The fluxes of some commonly used paleo-productivity proxies (TOC, biogenic opal, and Baxs) are not well-correlated geographically with satellite-based productivity estimates. Our new compilation of sedimentary fluxes provides detailed regional and global information, which will help refine the understanding of sediment preservation.
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ArticleHurricanes enhance labile carbon export to the deep ocean(American Geophysical Union, 2019-08-16) Pedrosa-Pamies, Rut ; Conte, Maureen H. ; Weber, John C. ; Johnson, RodneyTropical cyclones (hurricanes) generate intense surface ocean cooling and vertical mixing resulting in nutrient upwelling into the photic zone and episodic phytoplankton blooms. However, their influence on the deep ocean remains unknown. Here we present evidence that hurricanes also impact the ocean's biological pump by enhancing export of labile organic material to the deep ocean. In October 2016, Category 3 Hurricane Nicole passed over the Bermuda Time Series site in the oligotrophic NW Atlantic Ocean. Following Nicole's passage, particulate fluxes of lipids diagnostic of fresh phytodetritus, zooplankton, and microbial biomass increased by 30–300% at 1,500 m depth and 30–800% at 3,200 m depth. Mesopelagic suspended particles following Nicole were also enriched in phytodetrital material and in zooplankton and bacteria lipids, indicating particle disaggregation and a deepwater ecosystem response. Predicted climate‐induced increases in hurricane frequency and/or intensity may significantly alter ocean biogeochemical cycles by increasing the strength of the biological pump.
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ArticleIs the northern high-latitude land-based CO2 sink weakening?(American Geophysical Union, 2011-08-30) Hayes, Daniel J. ; McGuire, A. David ; Kicklighter, David W. ; Gurney, Kevin R. ; Burnside, T. J. ; Melillo, Jerry M.Studies indicate that, historically, terrestrial ecosystems of the northern high-latitude region may have been responsible for up to 60% of the global net land-based sink for atmospheric CO2. However, these regions have recently experienced remarkable modification of the major driving forces of the carbon cycle, including surface air temperature warming that is significantly greater than the global average and associated increases in the frequency and severity of disturbances. Whether Arctic tundra and boreal forest ecosystems will continue to sequester atmospheric CO2 in the face of these dramatic changes is unknown. Here we show the results of model simulations that estimate a 41 Tg C yr−1 sink in the boreal land regions from 1997 to 2006, which represents a 73% reduction in the strength of the sink estimated for previous decades in the late 20th century. Our results suggest that CO2 uptake by the region in previous decades may not be as strong as previously estimated. The recent decline in sink strength is the combined result of (1) weakening sinks due to warming-induced increases in soil organic matter decomposition and (2) strengthening sources from pyrogenic CO2 emissions as a result of the substantial area of boreal forest burned in wildfires across the region in recent years. Such changes create positive feedbacks to the climate system that accelerate global warming, putting further pressure on emission reductions to achieve atmospheric stabilization targets.
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ArticleLand carbon sequestration within the conterminous United States : regional- and state-level analyses(John Wiley & Sons, 2015-02-28) Lu, Xiaoliang ; Kicklighter, David W. ; Melillo, Jerry M. ; Reilly, John M. ; Xu, LiyiA quantitative understanding of the rate at which land ecosystems are sequestering or losing carbon at national-, regional-, and state-level scales is needed to develop policies to mitigate climate change. In this study, a new improved historical land use and land cover change data set is developed and combined with a process-based ecosystem model to estimate carbon sources and sinks in land ecosystems of the conterminous United States for the contemporary period of 2001–2005 and over the last three centuries. We estimate that land ecosystems in the conterminous United States sequestered 323 Tg C yr−1 at the beginning of the 21st century with forests accounting for 97% of this sink. This land carbon sink varied substantially across the conterminous United States, with the largest sinks occurring in the Southeast. Land sinks are large enough to completely compensate fossil fuel emissions in Maine and Mississippi, but nationally, carbon sinks compensate for only 20% of U.S. fossil fuel emissions. We find that regions that are currently large carbon sinks (e.g., Southeast) tend to have been large carbon sources over the longer historical period. Both the land use history and fate of harvested products can be important in determining a region's overall impact on the atmospheric carbon budget. While there are numerous options for reducing fossil fuels (e.g., increase efficiency and displacement by renewable resources), new land management opportunities for sequestering carbon need to be explored. Opportunities include reforestation and managing forest age structure. These opportunities will vary from state to state and over time across the United States.
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ArticleNitrogen attenuation of terrestrial carbon cycle response to global environmental factors(American Geophysical Union, 2009-12-30) Jain, Atul K. ; Yang, Xiaojuan ; Kheshgi, Haroon ; McGuire, A. David ; Post, Wilfred ; Kicklighter, David W.Nitrogen cycle dynamics have the capacity to attenuate the magnitude of global terrestrial carbon sinks and sources driven by CO2 fertilization and changes in climate. In this study, two versions of the terrestrial carbon and nitrogen cycle components of the Integrated Science Assessment Model (ISAM) are used to evaluate how variation in nitrogen availability influences terrestrial carbon sinks and sources in response to changes over the 20th century in global environmental factors including atmospheric CO2 concentration, nitrogen inputs, temperature, precipitation and land use. The two versions of ISAM vary in their treatment of nitrogen availability: ISAM-NC has a terrestrial carbon cycle model coupled to a fully dynamic nitrogen cycle while ISAM-C has an identical carbon cycle model but nitrogen availability is always in sufficient supply. Overall, the two versions of the model estimate approximately the same amount of global mean carbon uptake over the 20th century. However, comparisons of results of ISAM-NC relative to ISAM-C reveal that nitrogen dynamics: (1) reduced the 1990s carbon sink associated with increasing atmospheric CO2 by 0.53 PgC yr−1 (1 Pg = 1015g), (2) reduced the 1990s carbon source associated with changes in temperature and precipitation of 0.34 PgC yr−1 in the 1990s, (3) an enhanced sink associated with nitrogen inputs by 0.26 PgC yr−1, and (4) enhanced the 1990s carbon source associated with changes in land use by 0.08 PgC yr−1 in the 1990s. These effects of nitrogen limitation influenced the spatial distribution of the estimated exchange of CO2 with greater sink activity in high latitudes associated with climate effects and a smaller sink of CO2 in the southeastern United States caused by N limitation associated with both CO2 fertilization and forest regrowth. These results indicate that the dynamics of nitrogen availability are important to consider in assessing the spatial distribution and temporal dynamics of terrestrial carbon sources and sinks.
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PreprintSeasonal variability of multiple leaf traits captured by leaf spectroscopy at two temperate deciduous forests( 2015-08) Yang, Xi ; Tang, Jianwu ; Mustard, John F. ; Wu, Jin ; Zhao, Kaiguang ; Serbin, Shawn ; Lee, Jung-EunUnderstanding the temporal patterns of leaf traits is critical in determining the seasonality and magnitude of terrestrial carbon and water fluxes. However, robust and efficient ways to monitor the temporal dynamics of leaf traits are lacking. Here we assessed the potential of using leaf spectroscopy to predict leaf traits across their entire life cycle, forest sites, and light environments (sunlit vs. shaded) using a weekly sampled dataset across the entire growing season at two temperate deciduous forests. The dataset includes field measured leaf-level directional-hemispherical reflectance/transmittance together with seven important leaf traits [total chlorophyll (chlorophyll a and b), carotenoids, mass-based nitrogen concentration (Nmass), mass-based carbon concentration (Cmass), and leaf mass per area (LMA)]. All leaf properties, including leaf traits and spectra, varied significantly throughout the growing season, and displayed trait-specific temporal patterns. We used a Partial Least Square Regression (PLSR) analysis to estimate leaf traits from spectra, and found a significant capability of PLSR to capture the variability across time, sites, and light environment of all leaf traits investigated (R2=0.6~0.8 for temporal variability; R2=0.3~0.7 for cross-site variability; R2=0.4~0.8 for variability from light environments). We also tested alternative field sampling designs and found that for most leaf traits, biweekly leaf sampling throughout the growing season enabled accurate characterization of the leaf trait seasonal patterns. Increasing the sampling frequency improved in the estimation of Nmass, Cmass and LMA comparing with foliar pigments. Our results, based on the comprehensive analysis of spectra-trait relationships across time, sites and light environments, highlight the capacity and potential limitations to use leaf spectra to estimate leaf traits with strong seasonal variability, as an alternative to time-consuming traditional wet lab approaches.
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ArticleThe transcriptional response of soil bacteria to long-term warming and short-term seasonal fluctuations in a terrestrial forest(Frontiers Media, 2021-08-27) Chowdhury, Priyanka Roy ; Golas, Stefan M. ; Alteio, Lauren V. ; Stevens, Joshua T. E. ; Billings, Andrew F. ; Blanchard, Jeffrey L. ; Melillo, Jerry M. ; DeAngelis, Kristen M.Terrestrial ecosystems are an important carbon store, and this carbon is vulnerable to microbial degradation with climate warming. After 30 years of experimental warming, carbon stocks in a temperate mixed deciduous forest were observed to be reduced by 30% in the heated plots relative to the controls. In addition, soil respiration was seasonal, as was the warming treatment effect. We therefore hypothesized that long-term warming will have higher expressions of genes related to carbohydrate and lipid metabolism due to increased utilization of recalcitrant carbon pools compared to controls. Because of the seasonal effect of soil respiration and the warming treatment, we further hypothesized that these patterns will be seasonal. We used RNA sequencing to show how the microbial community responds to long-term warming (~30 years) in Harvard Forest, MA. Total RNA was extracted from mineral and organic soil types from two treatment plots (+5°C heated and ambient control), at two time points (June and October) and sequenced using Illumina NextSeq technology. Treatment had a larger effect size on KEGG annotated transcripts than on CAZymes, while soil types more strongly affected CAZymes than KEGG annotated transcripts, though effect sizes overall were small. Although, warming showed a small effect on overall CAZymes expression, several carbohydrate-associated enzymes showed increased expression in heated soils (~68% of all differentially expressed transcripts). Further, exploratory analysis using an unconstrained method showed increased abundances of enzymes related to polysaccharide and lipid metabolism and decomposition in heated soils. Compared to long-term warming, we detected a relatively small effect of seasonal variation on community gene expression. Together, these results indicate that the higher carbohydrate degrading potential of bacteria in heated plots can possibly accelerate a self-reinforcing carbon cycle-temperature feedback in a warming climate.