Berger
Cory A.
Berger
Cory A.
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ArticleDe novo transcriptome assembly of the Southern Ocean copepod Rhincalanus gigas sheds light on developmental changes in gene expression(Elsevier, 2021-01-29) Berger, Cory A. ; Steinberg, Deborah K. ; Copley, Nancy ; Tarrant, Ann M.Copepods are small crustaceans that dominate most zooplankton communities in terms of both abundance and biomass. In the polar oceans, a subset of large lipid-storing copepods occupy central positions in the food web because of their important role in linking phytoplankton and microzooplankton with higher trophic levels. In this paper, we generated a high-quality de novo transcriptome for Rhincalanus gigas, the largest—and among the most abundant—of the Southern Ocean copepods. We then conducted transcriptional profiling to characterize the developmental transition between late-stage juveniles and adult females. We found that juvenile R. gigas substantially upregulate lipid synthesis and glycolysis pathways relative to females, as part of a developmental gene expression program that also implicates processes such as muscle growth, chitin formation, and ion transport. This study provides the first transcriptional profile of a developmental transition within Rhincalanus gigas or any endemic Southern Ocean copepod, thereby extending our understanding of copepod molecular physiology.
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ArticleSensory conflict disrupts circadian rhythms in the sea anemone Nematostella vectensis(eLife Sciences Publications, 2023-04-06) Berger, Cory A. ; Tarrant, Ann M.Circadian clocks infer time of day by integrating information from cyclic environmental factors called zeitgebers, including light and temperature. Single zeitgebers entrain circadian rhythms, but few studies have addressed how multiple, simultaneous zeitgeber cycles interact to affect clock behavior. Misalignment between zeitgebers ('sensory conflict') can disrupt circadian rhythms, or alternatively clocks may privilege information from one zeitgeber over another. Here, we show that temperature cycles modulate circadian locomotor rhythms in, a model system for cnidarian circadian biology. We conduct behavioral experiments across a comprehensive range of light and temperature cycles and find that's circadian behavior is disrupted by chronic misalignment between light and temperature, which involves disruption of the endogenous clock itself rather than a simple masking effect. Sensory conflict also disrupts the rhythmic transcriptome, with numerous genes losing rhythmic expression. However, many metabolic genes remained rhythmic and in-phase with temperature, and other genes even gained rhythmicity, implying that some rhythmic metabolic processes persist even when behavior is disrupted. Our results show that a cnidarian clock relies on information from light and temperature, rather than prioritizing one signal over the other. Although we identify limits to the clock's ability to integrate conflicting sensory information, there is also a surprising robustness of behavioral and transcriptional rhythmicity.
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Working PaperFinal cruise report and post-cruise sample processing R/V Gulf Challenger “GC Mixo 23-02”(Woods Hole Oceanographic Institution, 2023-11-28) Alatalo, Philip ; Gast, Rebecca J. ; Tarrant, Ann M. ; Zuñiga, Rodrigo ; Berger, Cory A.A primary topic of interest in the field of biological oceanography is the role of planktonic productivity in the global carbon cycle. Over the past 20+ years, the traditional food web of algal production, zooplanktonic consumers and higher trophic level predators has been undergoing revision with a stronger understanding of the contributions made within the microbial loop. Of particular interest has been mixotrophy, the blurring of trophic mode assignments within the The overall goal of this cruise was to obtain a snapshot of the prevalence of mixotrophy within the Gulf of Maine and the potential contributions of mixotrophs to copepod diets. We proposed to accomplish this goal by sampling water and zooplankton from 3 stations.