Stanley
Rachel H. R.
Stanley
Rachel H. R.
No Thumbnail Available
Search Results
Now showing
1 - 8 of 8
-
ArticleImpact of recently upwelled water on productivity investigated using in situ and incubation-based methods in Monterey Bay(John Wiley & Sons, 2017-03-11) Manning, Cara C. ; Stanley, Rachel H. R. ; Nicholson, David P. ; Smith, Jason M. ; Pennington, Timothy ; Fewings, Melanie R. ; Squibb, Michael E. ; Chavez, Francisco P.Photosynthetic conversion of inline image to organic carbon and the transport of this carbon from the surface to the deep ocean is an important regulator of atmospheric inline image. To understand the controls on carbon fluxes in a productive region impacted by upwelling, we measured biological productivity via multiple methods during a cruise in Monterey Bay, California. We quantified net community production and gross primary production from measurements of inline image/Ar and inline image triple isotopes ( inline image), respectively. We simultaneously conducted incubations measuring the uptake of 14C, inline image, and inline image, and nitrification, and deployed sediment traps. At the start of the cruise (Phase 1) the carbon cycle was at steady state and the estimated net community production was 35(10) and 35(8) mmol C m−2 d−1 from inline image/Ar and 15N incubations, respectively, a remarkably good agreement. During Phase 1, net primary production was 96(27) mmol C m−2 d−1 from C uptake, and gross primary production was 209(17) mmol C m−2 d−1 from inline image. Later in the cruise (Phase 2), recently upwelled water with higher nutrient concentrations entered the study area, causing 14C and inline image uptake to increase substantially. Continuous inline image/Ar measurements revealed submesoscale variability in water mass structure and likely productivity in Phase 2 that was not evident from the incubations. These data demonstrate that inline image/Ar and inline image incubation-based NCP estimates can give equivalent results in an N-limited, coastal system, when the nonsteady state inline image fluxes are negligible or can be quantified.
-
ArticleChanges in gross oxygen production, net oxygen production, and air-water gas exchange during seasonal ice melt in Whycocomagh Bay, a Canadian estuary in the Bras d'or Lake system(European Geosciences Union, 2019-09-05) Manning, Cara C. ; Stanley, Rachel H. R. ; Nicholson, David P. ; Loose, Brice ; Lovely, Ann ; Schlosser, Peter ; Hatcher, Bruce G.Sea ice is an important control on gas exchange and primary production in polar regions. We measured net oxygen production (NOP) and gross oxygen production (GOP) using near-continuous measurements of the O2∕Ar gas ratio and discrete measurements of the triple isotopic composition of O2, during the transition from ice-covered to ice-free conditions, in Whycocomagh Bay, an estuary in the Bras d'Or Lake system in Nova Scotia, Canada. The volumetric gross oxygen production was 5.4+2.8−1.6 mmol O2 m−3 d−1, similar at the beginning and end of the time series, and likely peaked at the end of the ice melt period. Net oxygen production displayed more temporal variability and the system was on average net autotrophic during ice melt and net heterotrophic following the ice melt. We performed the first field-based dual tracer release experiment in ice-covered water to quantify air–water gas exchange. The gas transfer velocity at >90 % ice cover was 6 % of the rate for nearly ice-free conditions. Published studies have shown a wide range of results for gas transfer velocity in the presence of ice, and this study indicates that gas transfer through ice is much slower than the rate of gas transfer through open water. The results also indicate that both primary producers and heterotrophs are active in Whycocomagh Bay during spring while it is covered in ice.
-
ArticleQuantifying air-sea gas exchange using noble gases in a coastal upwelling zone(IOPScience, 2016) Manning, Cara C. ; Stanley, Rachel H. R. ; Nicholson, David P. ; Squibb, Michael E.The diffusive and bubble-mediated components of air-sea gas exchange can be quantified separately using time-series measurements of a suite of dissolved inert gases. We have evaluated the performance of four published air-sea gas exchange parameterizations using a five-day time-series of dissolved He, Ne, Ar, Kr, and Xe concentration in Monterey Bay, CA. We constructed a vertical model including surface air-sea gas exchange and vertical diffusion. Diffusivity was measured throughout the cruise from profiles of turbulent microstructure. We corrected the mixed layer gas concentrations for an upwelling event that occurred partway through the cruise. All tested parameterizations gave similar results for Ar, Kr, and Xe; their air-sea fluxes were dominated by diffusive gas exchange during our study. For He and Ne, which are less soluble, and therefore more sensitive to differences in the treatment of bubble-mediated exchange, the parameterizations gave widely different results with respect to the net gas exchange flux and the bubble flux. This study demonstrates the value of using a suite of inert gases, especially the lower solubility ones, to parameterize air-sea gas exchange.
-
ArticleEvaluating triple oxygen isotope estimates of gross primary production at the Hawaii Ocean Time-series and Bermuda Atlantic Time-series Study sites(American Geophysical Union, 2012-05-08) Nicholson, David P. ; Stanley, Rachel H. R. ; Barkan, Eugeni ; Karl, David M. ; Luz, Boaz ; Quay, Paul D. ; Doney, Scott C.The triple oxygen isotopic composition of dissolved oxygen (17Δ) is a promising tracer of gross oxygen productivity (P) in the ocean. Recent studies have inferred a high and variable ratio of P to 14C net primary productivity (12–24 h incubations) (e.g., P:NPP(14C) of 5–10) using the 17Δ tracer method, which implies a very low efficiency of phytoplankton growth rates relative to gross photosynthetic rates. We added oxygen isotopes to a one-dimensional mixed layer model to assess the role of physical dynamics in potentially biasing estimates of P using the 17Δ tracer method at the Bermuda Atlantic Time-series Study (BATS) and Hawaii Ocean Time-series (HOT). Model results were compared to multiyear observations at each site. Entrainment of high 17Δ thermocline water into the mixed layer was the largest source of error in estimating P from mixed layer 17Δ. At both BATS and HOT, entrainment bias was significant throughout the year and resulted in an annually averaged overestimate of mixed layer P of 60 to 80%. When the entrainment bias is corrected for, P calculated from observed 17Δ and 14C productivity incubations results in a gross:net productivity ratio of 2.6 (+0.9 −0.8) at BATS. At HOT a gross:net ratio decreasing linearly from 3.0 (+1.0 −0.8) at the surface to 1.4 (+0.6 −0.6) at depth best reproduced observations. In the seasonal thermocline at BATS, however, a significantly higher gross:net ratio or large lateral fluxes of 17Δ must be invoked to explain 17Δ field observations.
-
ArticleA phytoplankton model for the allocation of gross photosynthetic energy including the trade‐offs of diazotrophy(John Wiley & Sons, 2018-06-18) Nicholson, David P. ; Stanley, Rachel H. R. ; Doney, Scott C.Gross photosynthetic activity by phytoplankton is directed to linear and alternative electron pathways that generate ATP, reductant, and fix carbon. Ultimately less than half is directed to net growth. Here we present a phytoplankton cell allocation model that explicitly represents a number of cell metabolic processes and functional pools with the goal of evaluating ATP and reductant demands as a function of light, nitrate, iron, oxygen, and temperature for diazotrophic versus nondiazotrophic growth. We employ model analogues of Synechoccocus and Crocosphaera watsonii, to explore the trade‐offs of diazotrophy over a range of environmental conditions. Model analogues are identical in construction, except for an iron quota associated with nitrogenase, an additional respiratory demand to remove oxygen in order to protect nitrogenase and an additional ATP demand to split dinitrogen. We find that these changes explain observed differences in growth rate and iron limitation between diazotrophs and nondiazotrophs. Oxygen removal imparted a significantly larger metabolic cost to diazotrophs than ATP demand for fixing nitrogen. Results suggest that diazotrophs devote a much smaller fraction of gross photosynthetic energy to growth than nondiazotrophs. The phytoplankton cell allocation model model provides a predictive framework for how photosynthate allocation varies with environmental conditions in order to balance cellular demands for ATP and reductant across phytoplankton functional groups.
-
ArticleThe triple oxygen isotope tracer of primary productivity in a dynamic ocean model(John Wiley & Sons, 2014-05-23) Nicholson, David P. ; Stanley, Rachel H. R. ; Doney, Scott C.The triple oxygen isotopic composition of dissolved oxygen (17Δdis) was added to the ocean ecosystem and biogeochemistry component of the Community Earth System Model, version 1.1.1. Model simulations were used to investigate the biological and physical dynamics of 17Δdis and assess its application as a tracer of gross photosynthetic production (gross oxygen production (GOP)) of O2 in the ocean mixed layer. The model reproduced large-scale patterns of 17Δdis found in observational data across diverse biogeographical provinces. Mixed layer model performance was best in the Pacific and had a negative bias in the North Atlantic and a positive bias in the Southern Ocean. Based on model results, the steady state equation commonly used to calculate GOP from tracer values overestimated the globally averaged model GOP by 29%. Vertical entrainment/mixing and the time rate of change of 17Δdis were the two largest sources of bias when applying the steady state method to calculate GOP. Entrainment/mixing resulted in the largest overestimation in midlatitudes and during summer and fall and almost never caused an underestimation of GOP. The tracer time rate of change bias resulted both in underestimation of GOP (e.g., during spring blooms at high latitudes) and overestimation (e.g., during the summer following a bloom). Seasonally, bias was highest in the fall (September-October-November in the Northern Hemisphere, March-April-May in the Southern), overestimating GOP by 62%, globally averaged. Overall, the steady state method was most accurate in equatorial and low-latitude regions where it estimated GOP to within ±10%. Field applicable correction terms are derived for entrainment and mixing that capture 86% of model vertical bias and require only mixed layer depth history and triple oxygen isotope measurements from two depths.
-
ArticleDissolved gases in the deep North Atlantic track ocean ventilation processes(National Academy of Sciences, 2023-03-14) Seltzer, Alan M. ; Nicholson, David P. ; Smethie, William M. ; Tyne, Rebecca L. ; Le Roy, Emilie ; Stanley, Rachel H. R. ; Stute, Martin ; Barry, Peter H. ; McPaul, Katelyn ; Davidson, Perrin W. ; Chang, Bonnie X. ; Rafter, Patrick A. ; Lethaby, Paul ; Johnson, Rod J. ; Khatiwala, Samar ; Jenkins, William J.Gas exchange between the atmosphere and ocean interior profoundly impacts global climate and biogeochemistry. However, our understanding of the relevant physical processes remains limited by a scarcity of direct observations. Dissolved noble gases in the deep ocean are powerful tracers of physical air-sea interaction due to their chemical and biological inertness, yet their isotope ratios have remained underexplored. Here, we present high-precision noble gas isotope and elemental ratios from the deep North Atlantic (~32°N, 64°W) to evaluate gas exchange parameterizations using an ocean circulation model. The unprecedented precision of these data reveal deep-ocean undersaturation of heavy noble gases and isotopes resulting from cooling-driven air-to-sea gas transport associated with deep convection in the northern high latitudes. Our data also imply an underappreciated and large role for bubble-mediated gas exchange in the global air-sea transfer of sparingly soluble gases, including O, N, and SF. Using noble gases to validate the physical representation of air-sea gas exchange in a model also provides a unique opportunity to distinguish physical from biogeochemical signals. As a case study, we compare dissolved N/Ar measurements in the deep North Atlantic to physics-only model predictions, revealing excess N from benthic denitrification in older deep waters (below 2.9 km). These data indicate that the rate of fixed N removal in the deep Northeastern Atlantic is at least three times higher than the global deep-ocean mean, suggesting tight coupling with organic carbon export and raising potential future implications for the marine N cycle.
-
ArticleRevising estimates of aquatic gross oxygen production by the triple oxygen isotope method to incorporate the local isotopic composition of water(John Wiley & Sons, 2017-10-25) Manning, Cara C. ; Howard, Evan M. ; Nicholson, David P. ; Ji, Brenda Y. ; Sandwith, Zoe O. ; Stanley, Rachel H. R.Measurement of the triple oxygen isotope (TOI) composition of O2 is an established method for quantifying gross oxygen production (GOP) in natural waters. A standard assumption to this method is that the isotopic composition of H2O, the substrate for photosynthetic O2, is equivalent to Vienna standard mean ocean water (VSMOW). We present and validate a method for estimating the TOI composition of H2O based on mixing of local meteoric water and seawater H2O end-members, and incorporating the TOI composition of H2O into GOP estimates. In the ocean, GOP estimates based on assuming the H2O is equivalent to VSMOW can have systematic errors of up to 48% and in low-salinity systems, errors can be a factor of 2 or greater. In future TOI-based GOP studies, TOI measurements of O2 and H2O should be paired when the H2O isotopic composition is expected to differ from VSMOW.