Complete genome of Nitrosospira briensis C-128, an ammonia-oxidizing bacterium from agricultural soil

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Date
2016-07-28
Author
Rice, Marlen C. 
Norton, Jeanette M. 
Valois, Frederica 
Bollmann, Annette 
Bottomley, Peter 
Klotz, Martin G. 
Laanbroek, Hendrikus 
Suwa, Yuichi 
Stein, Lisa Y. 
Sayavedra-Soto, Luis 
Woyke, Tanja 
Shapiro, Nicole 
Goodwin, Lynne A. 
Huntemann, Marcel 
Clum, Alicia 
Pillay, Manoj 
Kyrpides, Nikos C. 
Varghese, Neha 
Mikhailova, Natalia 
Markowitz, Victor 
Palaniappan, Krishna 
Ivanova, Natalia N. 
Stamatis, Dimitrios 
Reddy, T. B. K. 
Ngan, Chew Yee 
Daum, Chris 
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Citable URI
https://hdl.handle.net/1912/8486
As published
https://doi.org/10.1186/s40793-016-0168-4
DOI
10.1186/s40793-016-0168-4
Keyword
 Nitrosospira; Ammonia-oxidizing bacteria; Nitrification; Agricultural soil; Ammonia monooxygenase; Nitrous oxide; Chemolithotroph 
Abstract
Nitrosospira briensis C-128 is an ammonia-oxidizing bacterium isolated from an acid agricultural soil. N. briensis C-128 was sequenced with PacBio RS technologies at the DOE-Joint Genome Institute through their Community Science Program (2010). The high-quality finished genome contains one chromosome of 3.21 Mb and no plasmids. We identified 3073 gene models, 3018 of which are protein coding. The two-way average nucleotide identity between the chromosomes of Nitrosospira multiformis ATCC 25196 and Nitrosospira briensis C-128 was found to be 77.2 %. Multiple copies of modules encoding chemolithotrophic metabolism were identified in their genomic context. The gene inventory supports chemolithotrophic metabolism with implications for function in soil environments.
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© The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Standards in Genomic Sciences 11 (2016): 46, doi:10.1186/s40793-016-0168-4.
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Article: Rice, Marlen C., Norton, Jeanette M., Valois, Frederica, Bollmann, Annette, Bottomley, Peter, Klotz, Martin G., Laanbroek, Hendrikus, Suwa, Yuichi, Stein, Lisa Y., Sayavedra-Soto, Luis, Woyke, Tanja, Shapiro, Nicole, Goodwin, Lynne A., Huntemann, Marcel, Clum, Alicia, Pillay, Manoj, Kyrpides, Nikos C., Varghese, Neha, Mikhailova, Natalia, Markowitz, Victor, Palaniappan, Krishna, Ivanova, Natalia N., Stamatis, Dimitrios, Reddy, T. B. K., Ngan, Chew Yee, Daum, Chris, "Complete genome of Nitrosospira briensis C-128, an ammonia-oxidizing bacterium from agricultural soil", Standards in Genomic Sciences 11 (2016): 46, DOI:10.1186/s40793-016-0168-4, https://hdl.handle.net/1912/8486
 

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