Now showing items 1-10 of 10

  • The Genomic Standards Consortium 

    Field, Dawn; Amaral-Zettler, Linda A.; Cochrane, Guy R.; Cole, James R.; Dawyndt, Peter; Garrity, George M.; Gilbert, Jack A.; Glockner, Frank Oliver; Hirschman, Lynette; Karsch-Mizrachi, Ilene; Klenk, Hans-Peter; Knight, Rob; Kottmann, Renzo; Kyrpides, Nikos C.; Meyer, Folker; San Gil, Inigo; Sansone, Susanna-Assunta; Schriml, Lynn M.; Sterk, Peter; Tatusova, Tatiana; Ussery, David W.; White, Owen; Wooley, John (Public Library of Science, 2011-06-21)
    A vast and rich body of information has grown up as a result of the world's enthusiasm for 'omics technologies. Finding ways to describe and make available this information that maximise its usefulness has become a major ...
  • The genomic standards consortium : bringing standards to life for microbial ecology 

    Yilmaz, Pelin; Gilbert, Jack A.; Knight, Rob; Amaral-Zettler, Linda A.; Karsch-Mizrachi, Ilene; Cochrane, Guy R.; Nakamura, Yasukazu; Sansone, Susanna-Assunta; Glockner, Frank Oliver; Field, Dawn (Nature Publishing Group, 2011-04-07)
    Interest in sampling of diverse environments, combined with advances in high-throughput sequencing, vastly accelerates the pace at which new genomes and metagenomes are generated. For example, as of January 2011, 12 ...
  • Genomic Standards Consortium projects 

    Field, Dawn; Sterk, Peter; Kottmann, Renzo; De Smet, Wim; Amaral-Zettler, Linda A.; Cochrane, Guy R.; James, Cole R.; Davies, Neil; Dawyndt, Peter; Garrity, George M.; Gilbert, Jack A.; Glockner, Frank Oliver; Hirschman, Lynette; Klenk, Hans-Peter; Knight, Rob; Kyrpides, Nikos C.; Meyer, Folker; Karsch-Mizrachi, Ilene; Morrison, Norman; Robbins, Robert J.; San Gil, Inigo; Sansone, Susanna-Assunta; Schriml, Lynn M.; Tatusova, Tatiana; Ussery, David W.; Yilmaz, Pelin; White, Owen; Wooley, John; Caporaso, Gregory (Genomic Standards Consortium, 2014)
    The Genomic Standards Consortium (GSC) is an open-membership community working towards the development, implementation and harmonization of standards in the field of genomics. The mission of the GSC is to improve digital ...
  • Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications 

    Yilmaz, Pelin; Kottmann, Renzo; Field, Dawn; Knight, Rob; Cole, James R.; Amaral-Zettler, Linda A.; Gilbert, Jack A.; Karsch-Mizrachi, Ilene; Johnston, Anjanette; Cochrane, Guy R.; Vaughan, Robert; Hunter, Christopher; Park, Joonhong; Morrison, Norman; Rocca-Serra, Philippe; Sterk, Peter; Arumugam, Manimozhiyan; Bailey, Mark; Baumgartner, Laura; Birren, Bruce W.; Blaser, Martin J.; Bonazzi, Vivien; Booth, Tim; Bork, Peer; Bushman, Frederic D.; Buttigieg, Pier Luigi; Chain, Patrick S. G.; Charlson, Emily; Costello, Elizabeth K.; Huot-Creasy, Heather; Dawyndt, Peter; DeSantis, Todd; Fierer, Noah; Fuhrman, Jed A.; Gallery, Rachel E.; Gevers, Dirk; Gibbs, Richard A.; San Gil, Inigo; Gonzalez, Antonio; Gordon, Jeffrey I.; Guralnick, Robert P.; Hankeln, Wolfgang; Highlander, Sarah; Hugenholtz, Philip; Jansson, Janet; Kau, Andrew L.; Kelley, Scott T.; Kennedy, Jerry; Knights, Dan; Koren, Omry; Kuczynski, Justin; Kyrpides, Nikos C.; Larsen, Robert; Lauber, Christian L.; Legg, Teresa; Ley, Ruth E.; Lozupone, Catherine A.; Ludwig, Wolfgang; Lyons, Donna; Maguire, Eamonn; Methe, Barbara A.; Meyer, Folker; Muegge, Brian; Nakielny, Sara; Nelson, Karen E.; Nemergut, Diana; Neufeld, Josh D.; Newbold, Lindsay K.; Oliver, Anna E.; Pace, Norman R.; Palanisamy, Giriprakash; Peplies, Jorg; Petrosino, Joseph; Proctor, Lita; Pruesse, Elmar; Quast, Christian; Raes, Jeroen; Ratnasingham, Sujeevan; Ravel, Jacques; Relman, David A.; Assunta-Sansone, Susanna; Schloss, Patrick D.; Schriml, Lynn M.; Sinha, Rohini; Smith, Michelle I.; Sodergren, Erica; Spor, Ayme; Stombaugh, Jesse; Tiedje, James M.; Ward, Doyle V.; Weinstock, George M.; Wendel, Doug; White, Owen; Whiteley, Andrew; Wilke, Andreas; Wortman, Jennifer R.; Yatsunenko, Tanya; Glockner, Frank Oliver (2011-01-04)
    Here we present a standard developed by the Genomic Standards Consortium (GSC) to describe marker gene sequences—the minimum information about a marker gene sequence (MIMARKS). We also introduce a system for describing the ...
  • RCN4GSC Workshop Report : managing data at the interface of biodiversity and (meta)genomics, March 2011 

    Robbins, Robert J.; Amaral-Zettler, Linda A.; Bik, Holly; Blum, Stan D.; Edwards, James; Field, Dawn; Garrity, George M.; Gilbert, Jack A.; Kottmann, Renzo; Krishtalka, Leonard; Lapp, Hilmar; Lawrence, Carolyn; Morrison, Norman; O Tuama, Eamonn; Parr, Cynthia; San Gil, Inigo; Schindel, David; Schriml, Lynn M.; Vieglas, David; Wooley, John (Genomic Standards Consortium, 2012-07-28)
    Building on the planning efforts of the RCN4GSC project, a workshop was convened in San Diego to bring together experts from genomics and metagenomics, biodiversity, ecology, and bioinformatics with the charge to identify ...
  • Report of the 14th Genomic Standards Consortium Meeting, Oxford, UK, September 17-21, 2012 

    Davies, Neil; Field, Dawn; Amaral-Zettler, Linda A.; Bicak, Mesude; Bourlat, Sarah; Coddington, Jonathan; Deck, John; Drummond, Alexei; Gilbert, Jack A.; Glockner, Frank Oliver; Kottmann, Renzo; Meyer, Chris; Morrison, Norman; Obst, Matthias; Robbins, Robert J.; Schriml, Lynn M.; Sterk, Peter; Stones-Havas, Steven (Genomic Standards Consortium, 2014)
    This report summarizes the proceedings of the 14th workshop of the Genomic Standards Consortium (GSC) held at the University of Oxford in September 2012. The workshop’s primary goal was to work towards the launch of the ...
  • Satellite remote sensing data can be used to model marine microbial metabolite turnover 

    Larsen, Peter E.; Scott, Nicole; Post, Anton F.; Field, Dawn; Knight, Rob; Hamada, Yuki; Gilbert, Jack A. (Nature Publishing Group, 2014-07-29)
    Sampling ecosystems, even at a local scale, at the temporal and spatial resolution necessary to capture natural variability in microbial communities are prohibitively expensive. We extrapolated marine surface microbial ...
  • The seasonal structure of microbial communities in the Western English Channel 

    Gilbert, Jack A.; Field, Dawn; Swift, Paul; Newbold, Lindsay K.; Oliver, Anna E.; Smyth, Tim J.; Somerfield, Paul J.; Huse, Susan M.; Joint, Ian (2009-06-05)
    Very few marine microbial communities are well characterized even with the weight of research effort presently devoted to it. Only a small proportion of this effort has been aimed at investigating temporal community ...
  • The taxonomic and functional diversity of microbes at a temperate coastal site : a ‘multi-omic’ study of seasonal and diel temporal variation 

    Gilbert, Jack A.; Field, Dawn; Swift, Paul; Thomas, Simon; Cummings, Denise; Temperton, Ben; Weynberg, Karen; Huse, Susan M.; Hughes, Margaret; Joint, Ian; Somerfield, Paul J.; Muhling, Martin (Public Library of Science, 2010-11-29)
    How microbial communities change over time in response to the environment is poorly understood. Previously a six-year time series of 16S rRNA V6 data from the Western English Channel demonstrated robust seasonal structure ...
  • Toward interoperable bioscience data 

    Sansone, Susanna-Assunta; Rocca-Serra, Philippe; Field, Dawn; Maguire, Eamonn; Taylor, Chris; Hofmann, Oliver; Fang, Hong; Neumann, Steffen; Tong, Weida; Amaral-Zettler, Linda A.; Begley, Kimberly; Booth, Tim; Bougueleret, Lydie; Burns, Gully; Chapman, Brad; Clark, Tim; Coleman, Lee-Ann; Copeland, Jay; Das, Sudeshna; de Daruvar, Antoine; de Matos, Paula; Dix, Ian; Edmunds, Scott; Evelo, Chris T.; Forster, Mark K.; Gaudet, Pascale; Gilbert, Jack A.; Goble, Carole; Griffin, Julian L.; Jacob, Daniel; Kleinjans, Jos; Harland, Lee; Haug, Kenneth; Hermjakob, Henning; Ho Sui, Shannan J.; Laederach, Alain; Liang, Shaoguang; Marshall, Stephen; McGrath, Annette; Merrill, Emily; Reilly, Dorothy; Roux, Magali; Shamu, Caroline E.; Shang, Catherine A.; Steinbeck, Christoph; Trefethen, Anne; Williams-Jones, Bryn; Wolstencroft, Katherine; Xenarios, Ioannis; Hide, Winston (Nature Publishing Group, 2012-01-27)
    To make full use of research data, the bioscience community needs to adopt technologies and reward mechanisms that support interoperability and promote the growth of an open 'data commoning' culture. Here we describe the ...