Characterization of new microsatellite loci for population genetic studies in the Smooth Cauliflower Coral (Stylophora sp.)
Citable URI
https://hdl.handle.net/1912/5939As published
https://doi.org/10.1007/s12686-012-9852-xDOI
10.1007/s12686-012-9852-xAbstract
A total of one hundred microsatellites loci were selected from the draft genome of Stylophora pistillata and evaluated in previously characterized samples of Stylophora cf pistillata from the Red Sea. 17 loci were amplified successfully and tested in 24 individuals from samples belonging to a single population from the central region of the Red Sea. The number of alleles ranged from 3 to 15 alleles per locus, while observed heterozygosity ranged from 0.292 to 0.95. Six of these loci showed significant deviations from Hardy–Weinberg equilibrium (HWE) expectations, and 4/136 paired loci comparisons suggested linkage disequilibrium after Bonferroni corrections. After excluding loci with significant HWE deviation and evidence of null alleles, average genetic diversity over loci in the population studied (N = 24, Nloci = 11) was 0.701 ± 0.380. This indicates that these loci can be used effectively to evaluate genetic diversity and undertake population genetics studies in Stylophora sp. populations.
Description
© The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Conservation Genetics Resources 5 (2013): 561-563, doi:10.1007/s12686-012-9852-x.
Collections
Suggested Citation
Conservation Genetics Resources 5 (2013): 561-563The following license files are associated with this item:
Except where otherwise noted, this item's license is described as Attribution 4.0 International
Related items
Showing items related by title, author, creator and subject.
-
Physiological responses of the coral host and associated endosymbionts measured during two experiments testing the effects of acute and chronic thermal stress on the scleractinian coral, Stylophora pistillata
(Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2021-08-11)This dataset describes physiological responses of the coral host and associated endosymbionts measured at the end of the heating hold period and after a recovery period during experiments conducted to test the effects of ... -
Temperature data measured during two experiments testing the effects of acute and chronic thermal stress on the scleractinian coral, Stylophora pistillata
(Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2021-08-11)This dataset includes temperature data (in degrees Celsius) measured during two experiments: an 18 h acute thermal stress assay using the Coral Bleaching Automated Stress System (CBASS) and a 14 day chronic heat stress ... -
Global-scale genetic structure of a cosmopolitan cold-water coral species
(Wiley, 2020-07-31)1. When considering widely distributed marine organisms with low dispersal capabilities, there is often an implication that the distribution of cosmopolitan species is an artefact of taxonomy, constrained by the absence ...
