Nematostella Embryonic Transcriptome

View/Open

Nematostella Transcriptome (81.54Mb)

Raw Reads/Hour 0/R1.1 (345.9Mb)

Raw Reads/Hour 0/R1.2 (347.3Mb)

Raw Reads/Hour 0/R1.3 (347.8Mb)

Raw Reads/Hour 0/R1.4 (346.6Mb)

Raw Reads/Hour 0/R1.5 (124.3Mb)

Raw Reads/Hour 0/R2.1 (348.2Mb)

Raw Reads/Hour 0/R2.2 (348.8Mb)

Raw Reads/Hour 0/R2.3 (350.2Mb)

Raw Reads/Hour 0/R2.4 (347.9Mb)

Raw Reads/Hour 0/R2.5 (124.3Mb)

Raw Reads/Hour 6/R1.1 (342.9Mb)

Raw Reads/Hour 6/R1.2 (342.1Mb)

Raw Reads/Hour 6/R1.3 (343.2Mb)

Raw Reads/Hour 6/R1.4 (345.4Mb)

Raw Reads/Hour 6/R1.5 (327.2Mb)

Raw Reads/Hour 6/R2.1 (346.5Mb)

Raw Reads/Hour 6/R2.2 (345.9Mb)

Raw Reads/Hour 6/R2.3 (345.9Mb)

Raw Reads/Hour 6/R2.4 (348.7Mb)

Raw Reads/Hour 6/R2.5 (329.5Mb)

Raw Reads/Hour 12/R1.1 (343.4Mb)

Raw Reads/Hour 12/R1.2 (343.4Mb)

Raw Reads/Hour 12/R1.3 (346.8Mb)

Raw Reads/Hour 12/R1.4 (210.3Mb)

Raw Reads/Hour 12/R2.1 (345.2Mb)

Raw Reads/Hour 12/R2.2 (344.4Mb)

Raw Reads/Hour 12/R2.3 (348.1Mb)

Raw Reads/Hour 12/R2.4 (210.1Mb)

Raw Reads/Hour 18/R1.1 (342.8Mb)

Raw Reads/Hour 18/R1.2 (341.6Mb)

Raw Reads/Hour 18/R1.3 (341.7Mb)

Raw Reads/Hour 18/R1.4 (342.7Mb)

Raw Reads/Hour 18/R1.5 (344.9Mb)

Raw Reads/Hour 18/R1.6 (346.5Mb)

Raw Reads/Hour 18/R1.7 (341.3Mb)

Raw Reads/Hour 18/R1.8 (69.84Mb)

Raw Reads/Hour 18/R2.1 (342.9Mb)

Raw Reads/Hour 18/R2.2 (342.7Mb)

Raw Reads/Hour 18/R2.3 (341.8Mb)

Raw Reads/Hour 18/R2.4 (342.6Mb)

Raw Reads/Hour 18/R2.5 (345.7Mb)

Raw Reads/Hour 18/R2.6 (346.1Mb)

Raw Reads/Hour 18/R2.7 (339.6Mb)

Raw Reads/Hour 18/R2.8 (70.03Mb)

Raw Reads/Hour 24A/R1.1 (342.6Mb)

Raw Reads/Hour 24A/R1.2 (345.2Mb)

Raw Reads/Hour 24A/R1.3 (350.2Mb)

Raw Reads/Hour 24A/R1.4 (338.9Mb)

Raw Reads/Hour 24A/R1.5 (344.6Mb)

Raw Reads/Hour 24A/R1.6 (349.7Mb)

Raw Reads/Hour 24A/R1.7 (342.5Mb)

Raw Reads/Hour 24A/R1.8 (345.5Mb)

Raw Reads/Hour 24A/R1.9 (349.3Mb)

Raw Reads/Hour 24A/R1.10 (9.835Mb)

Raw Reads/Hour 24A/R2.1 (344.2Mb)

Raw Reads/Hour 24A/R2.2 (348.2Mb)

Raw Reads/Hour 24A/R2.3 (351.9Mb)

Raw Reads/Hour 24A/R2.4 (340.8Mb)

Raw Reads/Hour 24A/R2.5 (346.4Mb)

Raw Reads/Hour 24A/R2.6 (351.6Mb)

Raw Reads/Hour 24A/R2.7 (343.9Mb)

Raw Reads/Hour 24A/R2.8 (348.4Mb)

Raw Reads/Hour 24A/R2.9 (348.7Mb)

Raw Reads/Hour 24A/R2.10 (10.05Mb)

Raw Reads/Hour 24B/R1.1 (237.9Mb)

Raw Reads/Hour 24B/R2.1 (240.4Mb)

Readme.txt (1.524Kb)

Date

2012-12-12

Author

Tulin, Sarah

Aguiar, Derek

Istrail, Sorin

Smith, Joel

Metadata

Show full item record

Citable URI

https://hdl.handle.net/1912/5613

Related Material/Data

https://hdl.handle.net/1912/6121

DOI

10.1575/1912/5613

Keyword

Nematostella Embryonic Transcriptome; RNA-Seq Raw Reads

Abstract

RNA-Seq was performed on Nematostella Embryos at 5 timepoints during early development: 0hrs, 6hrs, 12hrs, 18hrs, 24hrs after fertilization. Embryos were harvested, lysed and mRNAs were selected using Dynabeads. Directional sequencing libraries were constructed using the ScriptSeq kit from Epicentre. A control RNA set from the National Institute of Standards and Technology (NIST) were spiked-into the library preparation. Libraries were sequenced using the Illumina HiSeq 1000, version 3 chemistry, 100bp paired-end reads and produced over 200million reads. The reads were quality controlled filtered and assembled using the Trinity Assembler. This database contains the raw read files and the assembled Transcriptome.

Collections

Bell Center Data Sets

Suggested Citation

Dataset: Tulin, Sarah, Aguiar, Derek, Istrail, Sorin, Smith, Joel, "Nematostella Embryonic Transcriptome", 2012-12-12, DOI:10.1575/1912/5613, https://hdl.handle.net/1912/5613