Optical map of the genotype A1 WB C6 Giardia lamblia genome isolate
Date
2011-07Author
Perry, D. Alexander
Concept link
Morrison, Hilary G.
Concept link
Adam, Rodney D.
Concept link
Metadata
Show full item recordCitable URI
https://hdl.handle.net/1912/5050As published
https://doi.org/10.1016/j.molbiopara.2011.07.008Abstract
The Giardia lamblia genome consists of 12 Mb divided among 5 chromosomes ranging in size from approximately 1 to 4 Mb. The assembled contigs of the genotype A1 isolate, WB, were previously mapped along the 5 chromosomes on the basis of hybridization of plasmid clones representing the contigs to chromosomes separated by PFGE. In the current report, we have generated an MluI optical map of the WB genome to improve the accuracy of the physical map. This has allowed us to correct several assembly errors and to better define the extent of the subtelomeric regions that are not included in the genome assembly.
Description
Author Posting. © The Author(s), 2011. This is the author's version of the work. It is posted here by permission of Elsevier B.V. for personal use, not for redistribution. The definitive version was published in Molecular and Biochemical Parasitology 180 (2011): 112-114, doi:10.1016/j.molbiopara.2011.07.008.
Suggested Citation
Preprint: Perry, D. Alexander, Morrison, Hilary G., Adam, Rodney D., "Optical map of the genotype A1 WB C6 Giardia lamblia genome isolate", 2011-07, https://doi.org/10.1016/j.molbiopara.2011.07.008, https://hdl.handle.net/1912/5050Related items
Showing items related by title, author, creator and subject.
-
Acousto-optic effect compensation for optical determination of the normal velocity distribution associated with acoustic transducer radiation
Foote, Kenneth G.; Theobald, Peter D. (Acoustical Society of America, 2015-09-28)The acousto-optic effect, in which an acoustic wave causes variations in the optical index of refraction, imposes a fundamental limitation on the determination of the normal velocity, or normal displacement, distribution ... -
Coupled genomic evolutionary histories as signatures of organismal innovations in cephalopods: co-evolutionary signatures across levels of genome organization may shed light on functional linkage and origin of cephalopod novelties
Ritschard, Elena A.; Whitelaw, Brooke; Albertin, Caroline B.; Cooke, Ira R.; Strugnell, Jan M.; Simakov, Oleg (Wiley, 2019-10-30)How genomic innovation translates into organismal organization remains largely unanswered. Possessing the largest invertebrate nervous system, in conjunction with many species‐specific organs, coleoid cephalopods (octopuses, ... -
Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome
Durham, Bryndan P.; Grote, Jana; Whittaker, Kerry A.; Bender, Sara J.; Luo, Haiwei; Grim, Sharon L.; Brown, Julia M.; Casey, John F.; Dron, Antony; Florez-Leiva, Lennis; Krupke, Andreas; Luria, Catherine M.; Mine, Aric; Nigro, Olivia D.; Pather, Santhiska; Talarmin, Agathe; Wear, Emma K.; Weber, Thomas S.; Wilson, Jesse M.; Church, Matthew J.; DeLong, Edward F.; Karl, David M.; Steward, Grieg F.; Eppley, John; Kyrpides, Nikos C.; Schuster, Stephan; Rappe, Michael S. (Genomic Standards Consortium, 2014)Strain HIMB11 is a planktonic marine bacterium isolated from coastal seawater in Kaneohe Bay, Oahu, Hawaii belonging to the ubiquitous and versatile Roseobacter clade of the alphaproteobacterial family Rhodobacteraceae. ...