Now showing items 1-6 of 6

  • Examination of microbial proteome preservation techniques applicable to autonomous environmental sample collection 

    Saito, Mak A.; Bulygin, Vladimir V.; Moran, Dawn M.; Taylor, Craig D.; Scholin, Chris (Frontiers Media, 2011-11-07)
    Improvements in temporal and spatial sampling frequency have the potential to open new windows into the understanding of marine microbial dynamics. In recent years, efforts have been made to allow automated samplers to ...
  • Identifying reference genes with stable expression from high throughput sequence data 

    Alexander, Harriet; Jenkins, Bethany D.; Rynearson, Tatiana A.; Saito, Mak A.; Mercier, Melissa L.; Dyhrman, Sonya T. (Frontiers Media, 2012-11-09)
    Genes that are constitutively expressed across multiple environmental stimuli are crucial to quantifying differentially expressed genes, particularly when employing quantitative reverse transcriptase polymerase chain ...
  • Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics 

    Gobler, Christopher J.; Berry, Dianna L.; Dyhrman, Sonya T.; Wilhelm, Steven W.; Salamov, Asaf; Lobanov, Alexei V.; Zhang, Yan; Collier, Jackie L.; Wurch, Louie L.; Kustka, Adam B.; Dill, Brian D.; Shah, Manesh; VerBerkmoes, Nathan C.; Kuo, Alan J.; Terry, Astrid; Pangilinan, Jasmyn; Lindquist, Erika A.; Lucas, Susan; Paulsen, Ian T.; Hattenrath-Lehmann, Theresa K.; Talmage, Stephanie C.; Walker, Elyse A.; Koch, Florian; Burson, Amanda M.; Marcoval, Maria Alejandra; Tang, Ying-Zhong; LeCleir, Gary R.; Coyne, Kathryn J.; Berg, Gry M.; Bertrand, Erin M.; Saito, Mak A.; Gladyshev, Vadim N.; Grigoriev, Igor V. (2011-01)
    Harmful algal blooms (HABs) cause significant economic and ecological damage worldwide. Despite considerable efforts, a comprehensive understanding of the factors that promote these blooms has been lacking because the ...
  • Proteome changes driven by phosphorus deficiency and recovery in the brown tide-forming alga Aureococcus anophagefferens 

    Wurch, Louie L.; Bertrand, Erin M.; Saito, Mak A.; Van Mooy, Benjamin A. S.; Dyhrman, Sonya T. (Public Library of Science, 2011-12-14)
    Shotgun mass spectrometry was used to detect proteins in the harmful alga, Aureococcus anophagefferens, and monitor their relative abundance across nutrient replete (control), phosphate-deficient (−P) and −P refed with ...
  • Sulfide ameliorates metal toxicity for deep-sea hydrothermal vent archaea 

    Edgcomb, Virginia P.; Molyneaux, Stephen J.; Saito, Mak A.; Lloyd, Karen G.; Boer, Simone; Wirsen, Carl O.; Atkins, Michael S.; Teske, Andreas (American Society for Microbiology, 2004-04)
    The chemical stress factors for microbial life at deep-sea hydrothermal vents include high concentrations of heavy metals and sulfide. Three hyperthermophilic vent archaea, the sulfur-reducing heterotrophs Thermococcus ...
  • The transcriptome and proteome of the diatom Thalassiosira pseudonana reveal a diverse phosphorus stress response 

    Dyhrman, Sonya T.; Jenkins, Bethany D.; Rynearson, Tatiana A.; Saito, Mak A.; Mercier, Melissa L.; Alexander, Harriet; Whitney, LeAnn P.; Drzewianowski, Andrea; Bulygin, Vladimir V.; Bertrand, Erin M.; Wu, Zhijin; Benitez-Nelson, Claudia R.; Heithoff, Abigail (Public Library of Science, 2012-03-29)
    Phosphorus (P) is a critical driver of phytoplankton growth and ecosystem function in the ocean. Diatoms are an abundant class of marine phytoplankton that are responsible for significant amounts of primary production. ...