The genomic standards consortium : bringing standards to life for microbial ecology
Gilbert, Jack A.
Amaral-Zettler, Linda A.
Cochrane, Guy R.
Glockner, Frank Oliver
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Interest in sampling of diverse environments, combined with advances in high-throughput sequencing, vastly accelerates the pace at which new genomes and metagenomes are generated. For example, as of January 2011, 12 500 user-generated metagenomes have been submitted to the public MG-RAST Annotation server (http://metagenomics. nmpdr.org; Meyer et al., 2008), 490% of which were produced using high-throughput sequencing methodologies. We have entered into an era of ‘mega-sequencing projects’ that include the Genomic Encyclopaedia of Bacteria and Archaea project (http://www.jgi.doe.gov/programs/GEBA), the Microbial Earth Project (http://genome.jgi-psf. org/programs/bacteria-archaea/MEP/index.jsf), the Human Microbiome Project (http://nihroadmap.nih. gov/hmp), the Metagenomics of the Human Intestinal Tract consortium (http://www.metahit.eu), the Terragenome Initiative (http://www.terragenome. org), the Tara Oceans Expedition (http://oceans. taraexpeditions.org), the National Ecological Observatory Network (NEON-http://www.neoninc.org), the International Census of Marine Microbes (ICoMM-http://icomm.mbl.edu), Microbial Inventory Research Across Diverse Aquatic Long-Term Ecological Research Sites (http://amarallab.mbl. edu/mirada/mirada.html), the Earth Microbiome Project (http://www.earthmicrobiome.org) and other funded and unfunded projects, with many more visionary projects on the horizon.
© International Society for Microbial Ecology, 2011. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in The ISME Journal 5 (2011): 1565–1567, doi:10.1038/ismej.2011.39.
Suggested CitationArticle: Yilmaz, Pelin, Gilbert, Jack A., Knight, Rob, Amaral-Zettler, Linda A., Karsch-Mizrachi, Ilene, Cochrane, Guy R., Nakamura, Yasukazu, Sansone, Susanna-Assunta, Glockner, Frank Oliver, Field, Dawn, "The genomic standards consortium : bringing standards to life for microbial ecology", The ISME Journal 5 (2011): 1565–1567, DOI:10.1038/ismej.2011.39, https://hdl.handle.net/1912/4888
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