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Browsing CLI Publications by Title

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  • Edgcomb, Virginia P.; Breglia, S. A.; Yubuki, Naoji; Beaudoin, David J.; Patterson, David J.; Leander, Brian S.; Bernhard, Joan M. (2010-06)
    A distinct subgroup of euglenozoans, referred to as the “Symbiontida,” has been described from oxygen-depleted and sulfidic marine environments. By definition, all members of this group carry epibionts that are intimately ...
  • Thessen, Anne E.; Bowers, H. A.; Stoecker, Diane K. (2009-01)
    Clonal cultures of plankton are widely used in laboratory experiments and have contributed greatly to knowledge of microbial systems. However, many physiological characteristics vary drastically between strains of the ...
  • Sarkar, Indra Neil; Schenk, Ryan; Miller, Holly; Norton, Cathy N. (American Medical Informatics Association, 2009-11-14)
    The identification of relevant literature from within large collections is often a challenging endeavor. In the context of indexed resources, such as MEDLINE, it has been shown that keywords from a controlled vocabulary ...
  • Wheeler, Q. D.; Knapp, Sandra; Stevenson, D. W.; Stevenson, J.; Blum, Stan D.; Boom, B.. M.; Borisy, Gary G.; Buizer, J. L.; De Carvalho, M. R.; Cibrian, A.; Donoghue, M. J.; Doyle, V.; Gerson, E. M.; Graham, C. H.; Graves, P.; Graves, Sara J.; Guralnick, Robert P.; Hamilton, A. L.; Hanken, J.; Law, W.; Lipscomb, D. L.; Lovejoy, T. E.; Miller, Holly; Miller, J. S.; Naeem, S.; Novacek, M. J.; Page, L. M.; Platnick, N. I.; Porter-Morgan, H.; Raven, P. H.; Solis, M. A.; Valdecasas, A. G.; Van Der Leeuw, S.; Vasco, A.; Vermeulen, N.; Vogel, J.; Walls, R. L.; Wilson, E. O.; Woolley, J. B. (Taylor & Francis, 2012-03-27)
    The time is ripe for a comprehensive mission to explore and document Earth's species. This calls for a campaign to educate and inspire the next generation of professional and citizen species explorers, investments in ...
  • Yamashita, Grant; Miller, Holly; Goddard, Anthony; Norton, Cathy N. (2010-08-04)
    Many areas of science such as biology, medicine, and oceanography are becoming increasingly data-rich and most programs that train scientists do not address informatics techniques or technologies that are necessary for ...
  • Patterson, David J.; Cooper, J.; Kirk, Paul M.; Pyle, R. L.; Remsen, David P. (2010-09-20)
    Those who seek answers to big, broad questions about biology, especially questions emphasizing the organism (taxonomy, evolution, ecology), will soon benefit from an emerging names-based infrastructure. It will draw on ...
  • Akella, Lakshmi Manohar; Norton, Cathy N.; Miller, Holly (BioMed Central, 2012-08-22)
    A scientific name for an organism can be associated with almost all biological data. Name identification is an important step in many text mining tasks aiming to extract useful information from biological, biomedical and ...
  • Trainer, Vera L.; Bates, Stephen S.; Lundholm, Nina; Thessen, Anne E.; Cochlan, William P.; Adams, Nicolaus G.; Trick, Charles G. (Elsevier B.V., 2011-11-03)
    Over the last decade, our understanding of the environmental controls on Pseudo-nitzschia blooms and domoic acid (DA) production has matured. Pseudo-nitzschia have been found along most of the world's coastlines, while the ...
  • Raymond, Lisa; Pikula, Linda; Lowry, Roy; Urban, Ed; Moncoiffe, Gwenaelle; Pissierssens, Peter; Norton, Cathy N. (2011-05-25)
    This poster describes the development of international standards to publish oceanographic datasets. Research areas include the assignment of persistent identifiers, tracking provenance, linking datasets to publications, ...
  • Patterson, David J.; Remsen, David P.; Marino, William A.; Norton, Cathy N. (Taylor & Francis, 2006-06)
    Taxonomic indexing refers to a new array of taxonomically intelligent network services that use nomenclatural principles and elements of expert taxonomic knowledge to manage information about organisms. Taxonomic indexing ...
  • Remsen, David P.; Norton, Cathy N.; Patterson, David J. (Marine Biological Laboratory, 2006-02)
    Given the current trends, it seems inevitable that all biological documents will eventually exist in a digital format and be distributed across the internet. New network services and tools need to be developed to increase ...
  • Boyle, Brad; Hopkins, Nicole; Lu, Zhenyuan; Garay, Juan Antonio Raygoza; Mozzherin, Dmitry; Rees, Tony; Matasci, Naim; Narro, Martha L.; Piel, William H.; Mckay, Sheldon J.; Lowry, Sonya; Freeland, Chris; Peet, Robert K.; Enquist, Brian J. (BioMed Central, 2013-01-16)
    The digitization of biodiversity data is leading to the widespread application of taxon names that are superfluous, ambiguous or incorrect, resulting in mismatched records and inflated species numbers. The ultimate ...
  • Thessen, Anne E.; Patterson, David J.; Murray, Shauna A. (Public Library of Science, 2012-08-30)
    Taxonomists have been tasked with cataloguing and quantifying the Earth’s biodiversity. Their progress is measured in code-compliant species descriptions that include text, images, type material and molecular sequences. ...
  • Leary, Patrick R.; Remsen, David P.; Norton, Cathy N.; Patterson, David J.; Sarkar, Indra Neil (Oxford University Press, 2007-03-28)
    Web content syndication through standard formats such as RSS and ATOM has become an increasingly popular mechanism for publishers, news sources, and blogs to disseminate regularly updated content. These standardized ...

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