Now showing items 1-10 of 36
uBioRSS : tracking taxonomic literature using RSS
(Oxford University Press, 2007-03-28)
Web content syndication through standard formats such as RSS and ATOM has become an increasingly popular mechanism for publishers, news sources, and blogs to disseminate regularly updated content. These standardized ...
LigerCat : using “MeSH clouds” from journal, article, or gene citations to facilitate the identification of relevant biomedical literature
(American Medical Informatics Association, 2009-11-14)
The identification of relevant literature from within large collections is often a challenging endeavor. In the context of indexed resources, such as MEDLINE, it has been shown that keywords from a controlled vocabulary ...
A model for Bioinformatics training : the Marine Biological Laboratory
Many areas of science such as biology, medicine, and oceanography are becoming increasingly data-rich and most programs that train scientists do not address informatics techniques or technologies that are necessary for ...
The taxonomic significance of species that have only been observed once : the genus Gymnodinium (Dinoflagellata) as an example
(Public Library of Science, 2012-08-30)
Taxonomists have been tasked with cataloguing and quantifying the Earth’s biodiversity. Their progress is measured in code-compliant species descriptions that include text, images, type material and molecular sequences. ...
Building research networks to support campus programs [poster]
This poster focuses on the methods, tools and outcomes involved in creating two targeted research networks to support large, long-running research programs in the Woods Hole scientific community.
GenBank and PubMed : how connected are they?
(BioMed Central, 2009-06-09)
GenBank(R) is a public repository of all publicly available molecular sequence data from a range of sources. In addition to relevant metadata (e.g., sequence description, source organism and taxonomy), publication information ...
Broadly sampled multigene analyses yield a well-resolved eukaryotic tree of life
An accurate reconstruction of the eukaryotic tree of life is essential to identify the innovations underlying the diversity of microbial and macroscopic (e.g. plants and animals) eukaryotes. Previous work has divided ...
Intra- and interspecies differences in growth and toxicity of Pseudo-nitzschia while using different nitrogen sources
Clonal cultures of plankton are widely used in laboratory experiments and have contributed greatly to knowledge of microbial systems. However, many physiological characteristics vary drastically between strains of the ...
Names are key to the big new biology
Those who seek answers to big, broad questions about biology, especially questions emphasizing the organism (taxonomy, evolution, ecology), will soon benefit from an emerging names-based infrastructure. It will draw on ...
NetiNeti : Discovery of Scientific Names from Text Using Machine Learning Methods Figure 3
A scientific name for an organism can be associated with almost all biological data. Name identification is an important step in many text mining tasks aiming to extract useful information from biological, biomedical and ...