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Browsing Marine Biological Laboratory by Title

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  • Miller, Holly; Norton, Cathy N.; Sarkar, Indra Neil (BioMed Central, 2009-06-09)
    GenBank(R) is a public repository of all publicly available molecular sequence data from a range of sources. In addition to relevant metadata (e.g., sequence description, source organism and taxonomy), publication information ...
  • Novak, Alicia E.; Jost, Manda C.; Lu, Ying; Taylor, Alison D.; Zakon, Harold H.; Ribera, Angeles B. (2006-03-01)
    Voltage-gated sodium channels underlie action potential generation in excitable tissue. To establish the evolutionary mechanisms that shaped the vertebrate sodium channel a-subunit (SCNA) gene family and their encoded ...
  • Herbeck, Joshua T.; Wall, Dennis P.; Wernegreen, Jennifer J. (Society for General Mircobiology, 2003)
    Wigglesworthia glossinidia brevipalpis, the obligate bacterial endosymbiont of the tsetse fly Glossina brevipalpis, is characterized by extreme genome reduction and AT nucleotide composition bias. Here, multivariate ...
  • Wolf, Benita; Schwarzer, Adrian; Cote, Anik L.; Hampton, Thomas H.; Schwaab, Thomas; Huarte, Eduardo; Tomlinson, Craig R.; Gui, Jiang; Fisher, Jan L.; Fadul, Camilo E.; Hamilton, Joshua W.; Ernstoff, Marc S. (Public Library of Science, 2012-12-03)
    Lymphocytes are a key component of the immune system and their differentiation and function are directly influenced by cancer. We examined peripheral blood lymphocyte (PBL) gene expression as a biomarker of illness and ...
  • Serres, Margrethe H.; Riley, Monica (BioMed Central, 2005-03-09)
    Background: Escherichia coli a model organism provides information for annotation of other genomes. Our analysis of its genome has shown that proteins encoded by fused genes need special attention. Such composite ...
  • Vigliola, Laurent; Doherty, Peter J.; Meekan, Mark G.; Drown, Devin M.; Jones, M. Elizabeth; Barber, Paul H. (Ecological Society of America, 2007-05)
    Longitudinal sampling of four cohorts of Neopomacentrus filamentosus, a common tropical damselfish from Dampier Archipelago, Western Australia, revealed the evolution of size structure after settlement. Light traps collected ...
  • Gladyshev, Eugene A.; Arkhipova, Irina R. (2010-01)
    Bdelloid rotifers are microscopic invertebrate animals best known for their ancient asexuality and the ability to survive desiccation at any life stage. Both factors are expected to have a profound influence on their ...
  • Serres, Margrethe H.; Riley, Monica (American Society for Microbiology, 2006-07)
    Genomic sequences have been used to find the genetic foundation for carbon source metabolism in Shewanella oneidensis MR-1. Annotated S. oneidensis MR-1 gene products were examined for their sequence similarity to enzymes ...
  • Flot, Jean-Francois; Hespeels, Boris; Li, Xiang; Noel, Benjamin; Arkhipova, Irina R.; Danchin, Etienne G. J.; Hejno, Andreas; Henrissat, Bernard; Koszul, Romain; Aury, Jean-Marc; Barbe, Valerie; Barthelemy, Roxane-Marie; Bast, Jens; Bazykin, Georgii A.; Chabrol, Olivier; Couloux, Arnaud; Da Rocha, Martine; Da Silva, Corinne; Gladyshev, Eugene A.; Gouret, Philippe; Hallatschek, Oskar; Hecox-Lea, Bette; Labadie, Karine; Lejeune, Benjamin; Piskurek, Oliver; Poulain, Julie; Rodriguez, Fernando; Ryan, Joseph F.; Vakhrusheva, Olga A.; Wajnberg, Eric; Wirth, Benedicte; Yushenova, Irina A.; Kellis, Manolis; Kondrashov, Alexey S.; Mark Welch, David B.; Pontarotti, Pierre; Weissenbach, Jean; Wincker, Patrick; Jaillon, Olivier; Van Doninck, Karine (Nature Publishing Group, 2013-07-21)
    Loss of sexual reproduction is considered an evolutionary dead end for metazoans, but bdelloid rotifers challenge this view as they appear to have persisted asexually for millions of years1. Neither male sex organs nor ...
  • Arkhipova, Irina R.; Batzer, Mark A.; Brosius, Juergen; Feschotte, Cedric; Moran, John V.; Schmitz, Jurgen; Jurka, Jerzy (BioMed Central, 2012-11-21)
    The third international conference on the genomic impact of eukaryotic transposable elements (TEs) was held 24 to 28 February 2012 at the Asilomar Conference Center, Pacific Grove, CA, USA. Sponsored in part by the National ...
  • Riley, Monica; Staley, James T.; Danchin, Antoine; Wang, Ting Zhang; Brettin, Thomas S.; Hauser, Loren J.; Land, Miriam L.; Thompson, Linda S. (BioMed Central, 2008-05-06)
    The genome sequence of the sea-ice bacterium Psychromonas ingrahamii 37, which grows exponentially at -12C, may reveal features that help to explain how this extreme psychrophile is able to grow at such low temperatures. ...
  • Field, Dawn; Amaral-Zettler, Linda A.; Cochrane, Guy R.; Cole, James R.; Dawyndt, Peter; Garrity, George M.; Gilbert, Jack A.; Glockner, Frank Oliver; Hirschman, Lynette; Karsch-Mizrachi, Ilene; Klenk, Hans-Peter; Knight, Rob; Kottmann, Renzo; Kyrpides, Nikos C.; Meyer, Folker; San Gil, Inigo; Sansone, Susanna-Assunta; Schriml, Lynn M.; Sterk, Peter; Tatusova, Tatiana; Ussery, David W.; White, Owen; Wooley, John (Public Library of Science, 2011-06-21)
    A vast and rich body of information has grown up as a result of the world's enthusiasm for 'omics technologies. Finding ways to describe and make available this information that maximise its usefulness has become a major ...
  • Yilmaz, Pelin; Gilbert, Jack A.; Knight, Rob; Amaral-Zettler, Linda A.; Karsch-Mizrachi, Ilene; Cochrane, Guy R.; Nakamura, Yasukazu; Sansone, Susanna-Assunta; Glockner, Frank Oliver; Field, Dawn (Nature Publishing Group, 2011-04-07)
    Interest in sampling of diverse environments, combined with advances in high-throughput sequencing, vastly accelerates the pace at which new genomes and metagenomes are generated. For example, as of January 2011, 12 ...
  • Akiyoshi, Donna E.; Morrison, Hilary G.; Lei, Shi; Feng, Xiaochuan; Zhang, Quanshun; Corradi, Nicolas; Mayanja, Harriet; Tumwine, James K.; Keeling, Patrick J.; Weiss, Louis M.; Tzipori, Saul (Public Library of Science, 2009-01-09)
    Enterocytozoon bieneusi is the most common microsporidian associated with human disease, particularly in the immunocompromised population. In the setting of HIV infection, it is associated with diarrhea and wasting syndrome. ...
  • Mahammad, Saleemulla; Prasanna Murthy, S. N.; Didonna, Alessandro; Grin, Boris; Israeli, Eitan; Perrot, Rodolphe; Bomont, Pascale; Julien, Jean-Pierre; Kuczmarski, Edward; Opal, Puneet; Goldman, Robert D. (American Society for Clinical Investigation, 2013-04-15)
    Giant axonal neuropathy (GAN) is an early-onset neurological disorder caused by mutations in the GAN gene (encoding for gigaxonin), which is predicted to be an E3 ligase adaptor. In GAN, aggregates of intermediate filaments ...
  • Nilsson, Dan-E; Warrant, Eric J.; Johnsen, Sonke; Hanlon, Roger T.; Shashar, Nadav (BioMed Central, 2013-09-08)
    We recently reported (Curr Biol 22:683–688, 2012) that the eyes of giant and colossal squid can grow to three times the diameter of the eyes of any other animal, including large fishes and whales. As an explanation to this ...
  • Aurrecoechea, Cristina; Brestelli, John; Brunk, Brian P.; Carlton, Jane M.; Dommer, Jennifer; Fischer, Steve; Gajria, Bindu; Gao, Xin; Gingle, Alan; Grant, Greg; Harb, Omar S.; Heiges, Mark; Innamorato, Frank; Iodice, John; Kissinger, Jessica C.; Kraemer, Eileen; Li, Wei; Miller, John A.; Morrison, Hilary G.; Nayak, Vishal; Pennington, Cary; Pinney, Deborah F.; Roos, David S.; Ross, Chris; Stoeckert, Christian J.; Sullivan, Steven; Treatman, Charles; Wang, Haiming (Oxford University Press, 2008-09-29)
    GiardiaDB (http://GiardiaDB.org) and TrichDB (http://TrichDB.org) house the genome databases for Giardia lamblia and Trichomonas vaginalis, respectively, and represent the latest additions to the EuPathDB (http://EuPathDB.org) ...
  • Freitas, Sara; Hatosy, Stephen; Fuhrman, Jed A.; Huse, Susan M.; Mark Welch, David B.; Sogin, Mitchell L.; Martiny, Adam C. (2011-12-08)
    Verrucomicrobia is a bacterial phylum that is commonly detected in soil but little is known about the distribution and diversity of this phylum in the marine environment. To address this, we analyzed the marine microbial ...
  • Reilly, John M.; Paltsev, S.; Felzer, Benjamin S.; Wang, X.; Kicklighter, David W.; Melillo, Jerry M.; Prinn, Ronald G.; Sarofim, Marcus C.; Sokolov, Andrei P.; Wang, C. (2006-01)
    Multiple environmental changes will have consequences for global vegetation. To the extent that crop yields and pasture and forest productivity are affected there can be important economic consequences. We examine the ...
  • Wollheim, Wilfred M.; Vorosmarty, Charles J.; Bouwman, A. F.; Green, Pamela; Harrison, John A.; Linder, Ernst; Peterson, Bruce J.; Seitzinger, Sybil P.; Syvitski, James P. M. (American Geophysical Union, 2008-06-20)
    We explored the role of aquatic systems in the global N cycle using a spatially distributed, within-basin, aquatic nitrogen (N) removal model, implemented within the Framework for Aquatic Modeling in the Earth System ...

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