Now showing items 285-304 of 806

  • GenBank and PubMed : how connected are they? 

    Miller, Holly; Norton, Cathy N.; Sarkar, Indra Neil (BioMed Central, 2009-06-09)
    GenBank(R) is a public repository of all publicly available molecular sequence data from a range of sources. In addition to relevant metadata (e.g., sequence description, source organism and taxonomy), publication information ...
  • Gene duplications and evolution of vertebrate voltage-gated sodium channels 

    Novak, Alicia E.; Jost, Manda C.; Lu, Ying; Taylor, Alison D.; Zakon, Harold H.; Ribera, Angeles B. (2006-03-01)
    Voltage-gated sodium channels underlie action potential generation in excitable tissue. To establish the evolutionary mechanisms that shaped the vertebrate sodium channel a-subunit (SCNA) gene family and their encoded ...
  • Gene expression level influences amino acid usage, but not codon usage, in the tsetse fly endosymbiont Wigglesworthia 

    Herbeck, Joshua T.; Wall, Dennis P.; Wernegreen, Jennifer J. (Society for General Mircobiology, 2003)
    Wigglesworthia glossinidia brevipalpis, the obligate bacterial endosymbiont of the tsetse fly Glossina brevipalpis, is characterized by extreme genome reduction and AT nucleotide composition bias. Here, multivariate ...
  • Gene expression profile of peripheral blood lymphocytes from renal cell carcinoma patients treated with IL-2, Interferon-α and dendritic cell vaccine 

    Wolf, Benita; Schwarzer, Adrian; Cote, Anik L.; Hampton, Thomas H.; Schwaab, Thomas; Huarte, Eduardo; Tomlinson, Craig R.; Gui, Jiang; Fisher, Jan L.; Fadul, Camilo E.; Hamilton, Joshua W.; Ernstoff, Marc S. (Public Library of Science, 2012-12-03)
    Lymphocytes are a key component of the immune system and their differentiation and function are directly influenced by cancer. We examined peripheral blood lymphocyte (PBL) gene expression as a biomarker of illness and ...
  • Gene fusions and gene duplications : relevance to genomic annotation and functional analysis 

    Serres, Margrethe H.; Riley, Monica (BioMed Central, 2005-03-09)
    Background: Escherichia coli a model organism provides information for annotation of other genomes. Our analysis of its genome has shown that proteins encoded by fused genes need special attention. Such composite ...
  • Genetic identity determines risk of post-settlement mortality of a marine fish 

    Vigliola, Laurent; Doherty, Peter J.; Meekan, Mark G.; Drown, Devin M.; Jones, M. Elizabeth; Barber, Paul H. (Ecological Society of America, 2007-05)
    Longitudinal sampling of four cohorts of Neopomacentrus filamentosus, a common tropical damselfish from Dampier Archipelago, Western Australia, revealed the evolution of size structure after settlement. Light traps collected ...
  • Genome structure of bdelloid rotifers : shaped by asexuality or desiccation? 

    Gladyshev, Eugene A.; Arkhipova, Irina R. (2010-01)
    Bdelloid rotifers are microscopic invertebrate animals best known for their ancient asexuality and the ability to survive desiccation at any life stage. Both factors are expected to have a profound influence on their ...
  • Genomic analysis of carbon source metabolism of Shewanella oneidensis MR-1 : predictions versus experiments 

    Serres, Margrethe H.; Riley, Monica (American Society for Microbiology, 2006-07)
    Genomic sequences have been used to find the genetic foundation for carbon source metabolism in Shewanella oneidensis MR-1. Annotated S. oneidensis MR-1 gene products were examined for their sequence similarity to enzymes ...
  • Genomic and metabolic diversity of Marine Group I Thaumarchaeota in the mesopelagic of two subtropical gyres 

    Swan, Brandon K.; Chaffin, Mark D.; Martinez-Garcia, Manuel; Morrison, Hilary G.; Field, Erin K.; Poulton, Nicole J.; Masland, E. Dashiell P.; Harris, Christopher C.; Sczyrba, Alexander; Chain, Patrick S. G.; Koren, Sergey; Woyke, Tanja; Stepanauskas, Ramunas (Public Library of Science, 2014-04-17)
    Marine Group I (MGI) Thaumarchaeota are one of the most abundant and cosmopolitan chemoautotrophs within the global dark ocean. To date, no representatives of this archaeal group retrieved from the dark ocean have been ...
  • Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga 

    Flot, Jean-Francois; Hespeels, Boris; Li, Xiang; Noel, Benjamin; Arkhipova, Irina R.; Danchin, Etienne G. J.; Hejno, Andreas; Henrissat, Bernard; Koszul, Romain; Aury, Jean-Marc; Barbe, Valerie; Barthelemy, Roxane-Marie; Bast, Jens; Bazykin, Georgii A.; Chabrol, Olivier; Couloux, Arnaud; Da Rocha, Martine; Da Silva, Corinne; Gladyshev, Eugene A.; Gouret, Philippe; Hallatschek, Oskar; Hecox-Lea, Bette; Labadie, Karine; Lejeune, Benjamin; Piskurek, Oliver; Poulain, Julie; Rodriguez, Fernando; Ryan, Joseph F.; Vakhrusheva, Olga A.; Wajnberg, Eric; Wirth, Benedicte; Yushenova, Irina A.; Kellis, Manolis; Kondrashov, Alexey S.; Mark Welch, David B.; Pontarotti, Pierre; Weissenbach, Jean; Wincker, Patrick; Jaillon, Olivier; Van Doninck, Karine (Nature Publishing Group, 2013-07-21)
    Loss of sexual reproduction is considered an evolutionary dead end for metazoans, but bdelloid rotifers challenge this view as they appear to have persisted asexually for millions of years1. Neither male sex organs nor ...
  • Genomic impact of eukaryotic transposable elements 

    Arkhipova, Irina R.; Batzer, Mark A.; Brosius, Juergen; Feschotte, Cedric; Moran, John V.; Schmitz, Jurgen; Jurka, Jerzy (BioMed Central, 2012-11-21)
    The third international conference on the genomic impact of eukaryotic transposable elements (TEs) was held 24 to 28 February 2012 at the Asilomar Conference Center, Pacific Grove, CA, USA. Sponsored in part by the National ...
  • The Genomic Standards Consortium 

    Field, Dawn; Amaral-Zettler, Linda A.; Cochrane, Guy R.; Cole, James R.; Dawyndt, Peter; Garrity, George M.; Gilbert, Jack A.; Glockner, Frank Oliver; Hirschman, Lynette; Karsch-Mizrachi, Ilene; Klenk, Hans-Peter; Knight, Rob; Kottmann, Renzo; Kyrpides, Nikos C.; Meyer, Folker; San Gil, Inigo; Sansone, Susanna-Assunta; Schriml, Lynn M.; Sterk, Peter; Tatusova, Tatiana; Ussery, David W.; White, Owen; Wooley, John (Public Library of Science, 2011-06-21)
    A vast and rich body of information has grown up as a result of the world's enthusiasm for 'omics technologies. Finding ways to describe and make available this information that maximise its usefulness has become a major ...
  • The genomic standards consortium : bringing standards to life for microbial ecology 

    Yilmaz, Pelin; Gilbert, Jack A.; Knight, Rob; Amaral-Zettler, Linda A.; Karsch-Mizrachi, Ilene; Cochrane, Guy R.; Nakamura, Yasukazu; Sansone, Susanna-Assunta; Glockner, Frank Oliver; Field, Dawn (Nature Publishing Group, 2011-04-07)
    Interest in sampling of diverse environments, combined with advances in high-throughput sequencing, vastly accelerates the pace at which new genomes and metagenomes are generated. For example, as of January 2011, 12 ...
  • Genomic Standards Consortium projects 

    Field, Dawn; Sterk, Peter; Kottmann, Renzo; De Smet, Wim; Amaral-Zettler, Linda A.; Cochrane, Guy R.; James, Cole R.; Davies, Neil; Dawyndt, Peter; Garrity, George M.; Gilbert, Jack A.; Glockner, Frank Oliver; Hirschman, Lynette; Klenk, Hans-Peter; Knight, Rob; Kyrpides, Nikos C.; Meyer, Folker; Karsch-Mizrachi, Ilene; Morrison, Norman; Robbins, Robert J.; San Gil, Inigo; Sansone, Susanna-Assunta; Schriml, Lynn M.; Tatusova, Tatiana; Ussery, David W.; Yilmaz, Pelin; White, Owen; Wooley, John; Caporaso, Gregory (Genomic Standards Consortium, 2014)
    The Genomic Standards Consortium (GSC) is an open-membership community working towards the development, implementation and harmonization of standards in the field of genomics. The mission of the GSC is to improve digital ...
  • Genomic survey of the non-cultivatable opportunistic human pathogen, Enterocytozoon bieneusi 

    Akiyoshi, Donna E.; Morrison, Hilary G.; Lei, Shi; Feng, Xiaochuan; Zhang, Quanshun; Corradi, Nicolas; Mayanja, Harriet; Tumwine, James K.; Keeling, Patrick J.; Weiss, Louis M.; Tzipori, Saul (Public Library of Science, 2009-01-09)
    Enterocytozoon bieneusi is the most common microsporidian associated with human disease, particularly in the immunocompromised population. In the setting of HIV infection, it is associated with diarrhea and wasting syndrome. ...
  • Genomics of an extreme psychrophile, Psychromonas ingrahamii 

    Riley, Monica; Staley, James T.; Danchin, Antoine; Wang, Ting Zhang; Brettin, Thomas S.; Hauser, Loren J.; Land, Miriam L.; Thompson, Linda S. (BioMed Central, 2008-05-06)
    The genome sequence of the sea-ice bacterium Psychromonas ingrahamii 37, which grows exponentially at -12C, may reveal features that help to explain how this extreme psychrophile is able to grow at such low temperatures. ...
  • Giant axonal neuropathy–associated gigaxonin mutations impair intermediate filament protein degradation 

    Mahammad, Saleemulla; Prasanna Murthy, S. N.; Didonna, Alessandro; Grin, Boris; Israeli, Eitan; Perrot, Rodolphe; Bomont, Pascale; Julien, Jean-Pierre; Kuczmarski, Edward; Opal, Puneet; Goldman, Robert D. (American Society for Clinical Investigation, 2013-04-15)
    Giant axonal neuropathy (GAN) is an early-onset neurological disorder caused by mutations in the GAN gene (encoding for gigaxonin), which is predicted to be an E3 ligase adaptor. In GAN, aggregates of intermediate filaments ...
  • The giant eyes of giant squid are indeed unexpectedly large, but not if used for spotting sperm whales 

    Nilsson, Dan-E; Warrant, Eric J.; Johnsen, Sonke; Hanlon, Roger T.; Shashar, Nadav (BioMed Central, 2013-09-08)
    We recently reported (Curr Biol 22:683–688, 2012) that the eyes of giant and colossal squid can grow to three times the diameter of the eyes of any other animal, including large fishes and whales. As an explanation to this ...
  • GiardiaDB and TrichDB : integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis 

    Aurrecoechea, Cristina; Brestelli, John; Brunk, Brian P.; Carlton, Jane M.; Dommer, Jennifer; Fischer, Steve; Gajria, Bindu; Gao, Xin; Gingle, Alan; Grant, Greg; Harb, Omar S.; Heiges, Mark; Innamorato, Frank; Iodice, John; Kissinger, Jessica C.; Kraemer, Eileen; Li, Wei; Miller, John A.; Morrison, Hilary G.; Nayak, Vishal; Pennington, Cary; Pinney, Deborah F.; Roos, David S.; Ross, Chris; Stoeckert, Christian J.; Sullivan, Steven; Treatman, Charles; Wang, Haiming (Oxford University Press, 2008-09-29)
    GiardiaDB (http://GiardiaDB.org) and TrichDB (http://TrichDB.org) house the genome databases for Giardia lamblia and Trichomonas vaginalis, respectively, and represent the latest additions to the EuPathDB (http://EuPathDB.org) ...
  • Global distribution and diversity of marine Verrucomicrobia 

    Freitas, Sara; Hatosy, Stephen; Fuhrman, Jed A.; Huse, Susan M.; Mark Welch, David B.; Sogin, Mitchell L.; Martiny, Adam C. (2011-12-08)
    Verrucomicrobia is a bacterial phylum that is commonly detected in soil but little is known about the distribution and diversity of this phylum in the marine environment. To address this, we analyzed the marine microbial ...