CAOS software for use in character-based DNA barcoding
Sarkar, Indra Neil
Planet, Paul J.
MetadataShow full item record
The success of character based DNA barcoding depends on the efficient identification of diagnostic character states from molecular sequences that have been organized hierarchically (e.g., according to phylogenetic methods). Similarly, the reliability of these identified diagnostic character states must be assessed according to their ability to diagnose new sequences. Here, a set of software tools is presented that implement the previously described Characteristic Attribute Organization System for both diagnostic identification and diagnostic-based classification. The software is publicly available from http://sarkarlab.mbl.edu/CAOS.
Author Posting. © The Authors, 2008. This is the author's version of the work. It is posted here by permission of Blackwell Publishing for personal use, not for redistribution. The definitive version was published in Molecular Ecology Resources 8 (2008): 1256-1259, doi:10.1111/j.1755-0998.2008.02235.x.
Showing items related by title, author, creator and subject.
Rach, J.; DeSalle, Rob; Sarkar, Indra Neil; Schierwater, B.; Hadrys, H. (Royal Society, 2007-11-08)DNA barcoding has become a promising means for identifying organisms of all life stages. Currently, phenetic approaches and tree-building methods have been used to define species boundaries and discover 'cryptic species'. ...
Maas, Amy E.; Blanco-Bercial, Leocadio; Lawson, Gareth L. (Public Library of Science, 2013-01-15)Thecosome pteropods (Mollusca, Gastropoda) are an ecologically important, diverse, and ubiquitous group of holoplanktonic animals that are the focus of intense research interest due to their external aragonite shell and ...
Seafloor character and sedimentary processes in eastern Long Island Sound and western Block Island Sound Poppe, Lawrence J.; DiGiacomo-Cohen, M. L.; Smith, Shepard M.; Stewart, H. F.; Forfinski, N. A. (2005-07-26)Multibeam bathymetric data and seismic-reflection profiles collected in eastern Long Island and western Block Island Sounds reveal previously unrecognized glacial features and modern bedforms. Glacial features include ...