A characterization of microbes at the San Pedro Ocean Time-series (SPOT) from 2005 to 2018, using SSU rRNA gene sequencing from two size fractions, with a universal primer set that amplifies from prokaryotes and eukaryotes

dc.contributor.author Yeh, Yi-Chun
dc.contributor.author Fuhrman, Jed A.
dc.coverage.spatial San Pedro Channel off the coast of Los Angeles
dc.coverage.spatial westlimit: -118.24; southlimit: 33.33; eastlimit: -118.24; northlimit: 33.33
dc.coverage.temporal 20050119 - 20180718 (UTC)
dc.date.accessioned 2023-01-30T19:20:06Z
dc.date.available 2023-01-30T19:20:06Z
dc.date.created 2022-12-29
dc.date.issued 2023-01-30
dc.description Dataset: SSU rRNA Gene Sequencing from SPOT
dc.description.abstract This study aims to characterize microbes at the San Pedro Ocean Time-series (SPOT) from 2005 to 2018, using small subunit (SSU) rRNA gene sequencing from two size fractions (0.2-1 and 1-80 μm), with a universal primer set that amplifies both prokaryotic 16S and eukaryotic 18S rRNA genes. This allows for direct comparisons of diversity patterns in a single set of analyses. This dataset includes National Center for Biotechnology Information (NCBI) accession numbers and related sample information. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/885982
dc.description.sponsorship NSF Division of Ocean Sciences (NSF OCE) OCE-1737409, Gordon and Betty Moore Foundation: Marine Microbiology Initiative (MMI) GBMF3779, Simons Foundation (Simons) CBIOMES 549943
dc.identifier.citation Yeh, Y.-C., & Fuhrman, J. A. (2023). A characterization of microbes at the San Pedro Ocean Time-series (SPOT) from 2005 to 2018, using SSU rRNA gene sequencing from two size fractions, with a universal primer set that amplifies from prokaryotes and eukaryotes (Version 1) [Data set]. Biological and Chemical Oceanography Data Management Office (BCO-DMO). https://doi.org/10.26008/1912/BCO-DMO.885982.1
dc.identifier.doi 10.26008/1912/bco-dmo.885982.1
dc.identifier.uri https://hdl.handle.net/1912/29629
dc.language.iso en_US
dc.publisher Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
dc.relation.uri http://lod.bco-dmo.org/id/dataset/885982
dc.relation.uri https://doi.org/10.26008/1912/bco-dmo.885982.1
dc.rights Creative Commons Attribution 4.0
dc.rights.uri https://creativecommons.org/licenses/by/4.0/
dc.title A characterization of microbes at the San Pedro Ocean Time-series (SPOT) from 2005 to 2018, using SSU rRNA gene sequencing from two size fractions, with a universal primer set that amplifies from prokaryotes and eukaryotes
dc.type Dataset
dspace.entity.type Publication
relation.isAuthorOfPublication 179f96de-8340-40b5-98d6-31b841f16486
relation.isAuthorOfPublication dcb797e6-6ca0-4aa6-a6a2-2975456b1a7b
relation.isAuthorOfPublication.latestForDiscovery 179f96de-8340-40b5-98d6-31b841f16486
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