A characterization of microbes at the San Pedro Ocean Time-series (SPOT) from 2005 to 2018, using SSU rRNA gene sequencing from two size fractions, with a universal primer set that amplifies from prokaryotes and eukaryotes
A characterization of microbes at the San Pedro Ocean Time-series (SPOT) from 2005 to 2018, using SSU rRNA gene sequencing from two size fractions, with a universal primer set that amplifies from prokaryotes and eukaryotes
dc.contributor.author | Yeh, Yi-Chun | |
dc.contributor.author | Fuhrman, Jed A. | |
dc.coverage.spatial | San Pedro Channel off the coast of Los Angeles | |
dc.coverage.spatial | westlimit: -118.24; southlimit: 33.33; eastlimit: -118.24; northlimit: 33.33 | |
dc.coverage.temporal | 20050119 - 20180718 (UTC) | |
dc.date.accessioned | 2023-01-30T19:20:06Z | |
dc.date.available | 2023-01-30T19:20:06Z | |
dc.date.created | 2022-12-29 | |
dc.date.issued | 2023-01-30 | |
dc.description | Dataset: SSU rRNA Gene Sequencing from SPOT | |
dc.description.abstract | This study aims to characterize microbes at the San Pedro Ocean Time-series (SPOT) from 2005 to 2018, using small subunit (SSU) rRNA gene sequencing from two size fractions (0.2-1 and 1-80 μm), with a universal primer set that amplifies both prokaryotic 16S and eukaryotic 18S rRNA genes. This allows for direct comparisons of diversity patterns in a single set of analyses. This dataset includes National Center for Biotechnology Information (NCBI) accession numbers and related sample information. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/885982 | |
dc.description.sponsorship | NSF Division of Ocean Sciences (NSF OCE) OCE-1737409, Gordon and Betty Moore Foundation: Marine Microbiology Initiative (MMI) GBMF3779, Simons Foundation (Simons) CBIOMES 549943 | |
dc.identifier.citation | Yeh, Y.-C., & Fuhrman, J. A. (2023). A characterization of microbes at the San Pedro Ocean Time-series (SPOT) from 2005 to 2018, using SSU rRNA gene sequencing from two size fractions, with a universal primer set that amplifies from prokaryotes and eukaryotes (Version 1) [Data set]. Biological and Chemical Oceanography Data Management Office (BCO-DMO). https://doi.org/10.26008/1912/BCO-DMO.885982.1 | |
dc.identifier.doi | 10.26008/1912/bco-dmo.885982.1 | |
dc.identifier.uri | https://hdl.handle.net/1912/29629 | |
dc.language.iso | en_US | |
dc.publisher | Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu | |
dc.relation.uri | http://lod.bco-dmo.org/id/dataset/885982 | |
dc.relation.uri | https://doi.org/10.26008/1912/bco-dmo.885982.1 | |
dc.rights | Creative Commons Attribution 4.0 | |
dc.rights.uri | https://creativecommons.org/licenses/by/4.0/ | |
dc.title | A characterization of microbes at the San Pedro Ocean Time-series (SPOT) from 2005 to 2018, using SSU rRNA gene sequencing from two size fractions, with a universal primer set that amplifies from prokaryotes and eukaryotes | |
dc.type | Dataset | |
dspace.entity.type | Publication | |
relation.isAuthorOfPublication | 179f96de-8340-40b5-98d6-31b841f16486 | |
relation.isAuthorOfPublication | dcb797e6-6ca0-4aa6-a6a2-2975456b1a7b | |
relation.isAuthorOfPublication.latestForDiscovery | 179f96de-8340-40b5-98d6-31b841f16486 |
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