Menden-Deuer Susanne

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Menden-Deuer
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Susanne
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  • Dataset
    Growth rates and equivalent spherical diameters of Heterosigma akashiwo after temperature transition
    (Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2020-01-09) Menden-Deuer, Susanne
    Quantifying phytoplankton growth as a function of environmental conditions such as temperature is critical for understanding and predicting production in the ocean. Typically, thermal response is described as the steady state growth rates under static conditions. However, here, with a clonal culture of Heterosigma akashiwo, temperature was manipulated in the laboratory with the goal of describing how growth rates may change over time through the acclimation process. Growth rates and equivalent spherical diameter of Heterosigma akashiwo after temperature transition are reported. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/783500
  • Dataset
    Equivalent spherical diameter of Heterosigma akashiwo grown at different temperatures
    (Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2020-01-09) Menden-Deuer, Susanne
    A key component of the effects of temperature on growth and production of phytoplankton is not only through changes in numerical abundance, but also biomass and proxies for biomass such as biovolume. To understand how temperature affected size and biovolumetric growth, repeated measurements of the mean size feature, equivalent spherical diameter (ESD), were recorded for each experimental replicate culture of Heterosigma akashiwo across a broad range of temperature treatments. These data were collected as part of the experiment designed to study the effect of changing temperature on phytoplankton growth rates. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/783509
  • Dataset
    Changes in biovolume in three herbivorous protists measured across a temperature gradient ranging from 0 to 22 degrees Celsius for 30 days
    (Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2021-08-24) Franzè, Gayantonia ; Menden-Deuer, Susanne
    This dataset reports changes in biovolume in three herbivorous protists measured across a temperature gradient ranging from 0 to 22 degrees Celsius for 30 days. The data provided served for the production of Figure 5 of Franzè and Menden-Deuer, 2020 (doi: 10.3354/meps13200). For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/857328
  • Dataset
    Environmental and biological conditions from R/V Porsild characterizing Disko Bay, Greenland in April-May 2011
    (Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2021-08-04) Menden-Deuer, Susanne
    Environmental and biological conditions from R/V Porsild characterizing Disko Bay, Greenland in April-May 2011. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/739708
  • Dataset
    Microscopy cell counts from multivariate mesocosm experiments conducted with a natural phytoplankton community from Narragansett Bay, RI
    (Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2021-04-28) Anderson, Stephanie I. ; Franze, Gayantonia ; Kling, Joshua D. ; Wilburn, Paul ; Kremer, Colin T. ; Menden-Deuer, Susanne ; Litchman, Elena ; Hutchins, David A. ; Rynearson, Tatiana A.
    This dataset represents microscopy cell counts from multivariate mesocosm experiments conducted with a natural phytoplankton community from Narragansett Bay, RI. These data were assessed in Anderson et al. The Interactive Effects of Temperature and Nutrients on a Spring Phytoplankton Community (in prep). For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/848977
  • Dataset
    Effect of microplastic ingestion on heterotrophic dinoflagellate ingestion rates
    (Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2021-08-02) Fulfer, Victoria ; Menden-Deuer, Susanne
    Data were collected examining the effect of microplastic ingestion on heterotrophic dinoflagellate ingestion rates. Heterotrophic dinoflagellate species O. marina and Gyrodinium sp. were incubated for 5 days under two conditions: a control, fed only algal prey I. galbana, and a treatment fed algal prey and microplastic particles. Samples were taken every 24 hours, with abundances of dinoflagellates, algal prey, and microplastics measured with a Beckman Coulter Counter and verified via microscopy. Ingestion rates were measured and compared between treatments. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/855573
  • Dataset
    Effect of microplastic ingestion on heterotrophic dinoflagellate growth rates
    (Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2021-08-02) Fulfer, Victoria ; Menden-Deuer, Susanne
    Data were collected examining the effect of microplastic ingestion on heterotrophic dinoflagellate growth rates. Heterotrophic dinoflagellate species O. marina and Gyrodinium sp. were incubated for 5 days under two conditions: a control, fed only algal prey I. galbana, and a treatment fed algal prey and microplastic particles. Samples were taken every 24 hours, with abundances of dinoflagellates, algal prey, and microplastics measured with a Beckman Coulter Counter and verified via microscopy. Ingestion rates were measured and compared between treatments. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/855583
  • Dataset
    Biomass contribution of dominant phytoplankton and herbivorous protists taxa from R/V Porsild in Disko Bay, West Greenland from 2011-04-23 to 2011-05-07
    (Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2021-05-20) Menden-Deuer, Susanne
    Biomass contribution of dominant phytoplankton and herbivorous protists taxa from R/V Porsild in Disko Bay, West Greenland from 2011-04-23 to 2011-05-07. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/739750
  • Dataset
    Growth rates of dominant plankton across 3 temperature treatments from R/V Porsild in Disko Bay, Greenland from April to May 2011
    (Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2021-05-20) Menden-Deuer, Susanne
    For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/739806
  • Dataset
    Elemental composition of phytoplankton communities from multivariate mesocosm experiments conducted with a natural phytoplankton community from Narragansett Bay, RI.
    (Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2021-04-28) Anderson, Stephanie I. ; Franze, Gayantonia ; Kling, Joshua D. ; Wilburn, Paul ; Kremer, Colin T. ; Menden-Deuer, Susanne ; Litchman, Elena ; Hutchins, David A. ; Rynearson, Tatiana A.
    This dataset reports the elemental composition of phytoplankton communities from multivariate mesocosm experiments conducted with a natural phytoplankton community from Narragansett Bay, RI. These data were assessed in Anderson et al. The Interactive Effects of Temperature and Nutrients on a Spring Phytoplankton Community (in prep). For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/848587
  • Dataset
    Effect of microplastic ingestion on heterotrophic dinoflagellate functional responses
    (Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2021-08-02) Fulfer, Victoria ; Menden-Deuer, Susanne
    Data were collected examining the effect of microplastic ingestion on heterotrophic dinoflagellate functional responses. Heterotrophic dinoflagellate species O. marina and Gyrodinium sp. were incubated for 5 days under two conditions: a control, fed only algal prey I. galbana, and a treatment fed algal prey and microplastic particles. Samples were taken every 24 hours, with abundances of dinoflagellates, algal prey, and microplastics measured with a Beckman Coulter Counter and verified via microscopy. Ingestion rates were measured and compared between treatments. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/855595
  • Article
    The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP) : illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing
    (Public Library of Science, 2014-06-24) Keeling, Patrick J. ; Burki, Fabien ; Wilcox, Heather M. ; Allam, Bassem ; Allen, Eric E. ; Amaral-Zettler, Linda A. ; Armbrust, E. Virginia ; Archibald, John M. ; Bharti, Arvind K. ; Bell, Callum J. ; Beszteri, Bank ; Bidle, Kay D. ; Cameron, Connor T. ; Campbell, Lisa ; Caron, David A. ; Cattolico, Rose Ann ; Collier, Jackie L. ; Coyne, Kathryn J. ; Davy, Simon K. ; Deschamps, Phillipe ; Dyhrman, Sonya T. ; Edvardsen, Bente ; Gates, Ruth D. ; Gobler, Christopher J. ; Greenwood, Spencer J. ; Guida, Stephanie M. ; Jacobi, Jennifer L. ; Jakobsen, Kjetill S. ; James, Erick R. ; Jenkins, Bethany D. ; John, Uwe ; Johnson, Matthew D. ; Juhl, Andrew R. ; Kamp, Anja ; Katz, Laura A. ; Kiene, Ronald P. ; Kudryavtsev, Alexander N. ; Leander, Brian S. ; Lin, Senjie ; Lovejoy, Connie ; Lynn, Denis ; Marchetti, Adrian ; McManus, George ; Nedelcu, Aurora M. ; Menden-Deuer, Susanne ; Miceli, Cristina ; Mock, Thomas ; Montresor, Marina ; Moran, Mary Ann ; Murray, Shauna A. ; Nadathur, Govind ; Nagai, Satoshi ; Ngam, Peter B. ; Palenik, Brian ; Pawlowski, Jan ; Petroni, Giulio ; Piganeau, Gwenael ; Posewitz, Matthew C. ; Rengefors, Karin ; Romano, Giovanna ; Rumpho, Mary E. ; Rynearson, Tatiana A. ; Schilling, Kelly B. ; Schroeder, Declan C. ; Simpson, Alastair G. B. ; Slamovits, Claudio H. ; Smith, David R. ; Smith, G. Jason ; Smith, Sarah R. ; Sosik, Heidi M. ; Stief, Peter ; Theriot, Edward ; Twary, Scott N. ; Umale, Pooja E. ; Vaulot, Daniel ; Wawrik, Boris ; Wheeler, Glen L. ; Wilson, William H. ; Xu, Yan ; Zingone, Adriana ; Worden, Alexandra Z.
    Microbial ecology is plagued by problems of an abstract nature. Cell sizes are so small and population sizes so large that both are virtually incomprehensible. Niches are so far from our everyday experience as to make their very definition elusive. Organisms that may be abundant and critical to our survival are little understood, seldom described and/or cultured, and sometimes yet to be even seen. One way to confront these problems is to use data of an even more abstract nature: molecular sequence data. Massive environmental nucleic acid sequencing, such as metagenomics or metatranscriptomics, promises functional analysis of microbial communities as a whole, without prior knowledge of which organisms are in the environment or exactly how they are interacting. But sequence-based ecological studies nearly always use a comparative approach, and that requires relevant reference sequences, which are an extremely limited resource when it comes to microbial eukaryotes. In practice, this means sequence databases need to be populated with enormous quantities of data for which we have some certainties about the source. Most important is the taxonomic identity of the organism from which a sequence is derived and as much functional identification of the encoded proteins as possible. In an ideal world, such information would be available as a large set of complete, well-curated, and annotated genomes for all the major organisms from the environment in question. Reality substantially diverges from this ideal, but at least for bacterial molecular ecology, there is a database consisting of thousands of complete genomes from a wide range of taxa, supplemented by a phylogeny-driven approach to diversifying genomics. For eukaryotes, the number of available genomes is far, far fewer, and we have relied much more heavily on random growth of sequence databases, raising the question as to whether this is fit for purpose.
  • Working Paper
    EXPORTS Measurements and Protocols for the NE Pacific Campaign
    (NASA STI Program and Woods Hole Oceanographic Institution, 2021-02) Behrenfeld, Michael J. ; Benitez-Nelson, Claudia R. ; Boss, Emmanuel S. ; Brzezinski, Mark A. ; Buck, Kristen N. ; Buesseler, Ken O. ; Burd, Adrian B. ; Carlson, Craig A. ; Cassar, Nicolas ; Cetinić, Ivona ; Close, Hilary G. ; Craig, Susanne E. ; D'Asaro, Eric A. ; Durkin, Colleen A. ; Estapa, Margaret L. ; Fassbender, Andrea ; Fox, James ; Freeman, Scott ; Gifford, Scott M. ; Gong, Weida ; Graff, Jason R. ; Gray, Deric ; Guidi, Lionel ; Halsey, Kim ; Hansell, Dennis A. ; Haëntjens, Nils ; Horner, Tristan J. ; Jenkins, Bethany D. ; Jones, Janice L. ; Karp-Boss, Lee ; Kramer, Sasha J. ; Lam, Phoebe J. ; Lee, Craig M. ; Lee, Jong-Mi ; Liu, Shuting ; Mannino, Antonio ; Maas, Amy E. ; Marchal, Olivier ; Marchetti, Adrian ; McDonnell, Andrew M. P. ; McNair, Heather ; Menden-Deuer, Susanne ; Morison, Francoise ; Nelson, Norman B. ; Nicholson, David P. ; Niebergall, Alexandria K. ; Omand, Melissa M. ; Passow, Uta ; Perry, Mary J. ; Popp, Brian N. ; Proctor, Chris ; Rafter, Patrick ; Roca-Martí, Montserrat ; Roesler, Collin S. ; Rubin, Edwina ; Rynearson, Tatiana A. ; Santoro, Alyson E. ; Siegel, David A. ; Sosik, Heidi M. ; Soto Ramos, Inia ; Stamieszkin, Karen ; Steinberg, Deborah K. ; Stephens, Brandon M. ; Thompson, Andrew F. ; Van Mooy, Benjamin A. S. ; Zhang, Xiaodong
    EXport Processes in the Ocean from Remote Sensing (EXPORTS) is a large-scale NASA-led and NSF co-funded field campaign that will provide critical information for quantifying the export and fate of upper ocean net primary production (NPP) using satellite information and state of the art technology.
  • Dataset
    Size-fractionated chlorophyll a from multivariate mesocosm experiments conducted with a natural phytoplankton community from Narragansett Bay, RI
    (Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2021-04-28) Anderson, Stephanie I. ; Franze, Gayantonia ; Kling, Joshua D. ; Wilburn, Paul ; Kremer, Colin T. ; Menden-Deuer, Susanne ; Litchman, Elena ; Hutchins, David A. ; Rynearson, Tatiana A.
    This dataset reports the size-fractionated chlorophyll a from multivariate mesocosm experiments conducted with a natural phytoplankton community from Narragansett Bay, RI. These data were assessed in Anderson et al. The Interactive Effects of Temperature and Nutrients on a Spring Phytoplankton Community (in prep). For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/848948
  • Dataset
    Abundance- and biomass-based growth rates of three heterotrophic protists measured across a temperature gradient ranging from 0 to 22 degrees Celsius for 30 days
    (Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2021-08-24) Franzè, Gayantonia ; Menden-Deuer, Susanne
    This dataset includes abundance- and biomass-based growth rates of three heterotrophic protists measured across a temperature gradient ranging from 0 to 22 degrees Celsius for 30 days. The data provided served for the production of Figures 2, 3, and 4 of Franzè and Menden-Deuer, 2020 (doi: 10.3354/meps13200). For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/857267
  • Dataset
    Comparison of abundance-based growth rate predicted following Q10 model, Eppley’s equation, and the linear model obtained in Franzè and Menden-Deuer, 2020
    (Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2021-08-24) Franzè, Gayantonia ; Menden-Deuer, Susanne
    This dataset contains a comparison of abundance-based growth rate predicted following Q10 model, Eppley’s equation, and the linear model obtained in Franzè and Menden-Deuer, 2020 (doi: 10.3354/meps13200). The data provided served for the production of Figure 6 of Franzè and Menden-Deuer, 2020. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/857356
  • Article
    An operational overview of the EXport Processes in the Ocean from RemoTe Sensing (EXPORTS) Northeast Pacific field deployment
    (University of California Press, 2021-07-07) Siegel, David A. ; Cetinić, Ivona ; Graff, Jason R. ; Lee, Craig M. ; Nelson, Norman B. ; Perry, Mary J. ; Soto Ramos, Inia ; Steinberg, Deborah K. ; Buesseler, Ken O. ; Hamme, Roberta C. ; Fassbender, Andrea ; Nicholson, David P. ; Omand, Melissa M. ; Robert, Marie ; Thompson, Andrew F. ; Amaral, Vinicius ; Behrenfeld, Michael J. ; Benitez-Nelson, Claudia R. ; Bisson, Kelsey ; Boss, Emmanuel S. ; Boyd, Philip ; Brzezinski, Mark A. ; Buck, Kristen N. ; Burd, Adrian B. ; Burns, Shannon ; Caprara, Salvatore ; Carlson, Craig A. ; Cassar, Nicolas ; Close, Hilary G. ; D'Asaro, Eric A. ; Durkin, Colleen A. ; Erickson, Zachary K. ; Estapa, Margaret L. ; Fields, Erik ; Fox, James ; Freeman, Scott ; Gifford, Scott M. ; Gong, Weida ; Gray, Deric ; Guidi, Lionel ; Haëntjens, Nils ; Halsey, Kim ; Huot, Yannick ; Hansell, Dennis A. ; Jenkins, Bethany D. ; Karp-Boss, Lee ; Kramer, Sasha J. ; Lam, Phoebe J. ; Lee, Jong-Mi ; Maas, Amy E. ; Marchal, Olivier ; Marchetti, Adrian ; McDonnell, Andrew M. P. ; McNair, Heather ; Menden-Deuer, Susanne ; Morison, Francoise ; Niebergall, Alexandria K. ; Passow, Uta ; Popp, Brian N. ; Potvin, Geneviève ; Resplandy, Laure ; Roca-Martí, Montserrat ; Roesler, Collin S. ; Rynearson, Tatiana A. ; Traylor, Shawnee ; Santoro, Alyson E. ; Seraphin, Kanesa ; Sosik, Heidi M. ; Stamieszkin, Karen ; Stephens, Brandon M. ; Tang, Weiyi ; Van Mooy, Benjamin ; Xiong, Yuanheng ; Zhang, Xiaodong
    The goal of the EXport Processes in the Ocean from RemoTe Sensing (EXPORTS) field campaign is to develop a predictive understanding of the export, fate, and carbon cycle impacts of global ocean net primary production. To accomplish this goal, observations of export flux pathways, plankton community composition, food web processes, and optical, physical, and biogeochemical (BGC) properties are needed over a range of ecosystem states. Here we introduce the first EXPORTS field deployment to Ocean Station Papa in the Northeast Pacific Ocean during summer of 2018, providing context for other papers in this special collection. The experiment was conducted with two ships: a Process Ship, focused on ecological rates, BGC fluxes, temporal changes in food web, and BGC and optical properties, that followed an instrumented Lagrangian float; and a Survey Ship that sampled BGC and optical properties in spatial patterns around the Process Ship. An array of autonomous underwater assets provided measurements over a range of spatial and temporal scales, and partnering programs and remote sensing observations provided additional observational context. The oceanographic setting was typical of late-summer conditions at Ocean Station Papa: a shallow mixed layer, strong vertical and weak horizontal gradients in hydrographic properties, sluggish sub-inertial currents, elevated macronutrient concentrations and low phytoplankton abundances. Although nutrient concentrations were consistent with previous observations, mixed layer chlorophyll was lower than typically observed, resulting in a deeper euphotic zone. Analyses of surface layer temperature and salinity found three distinct surface water types, allowing for diagnosis of whether observed changes were spatial or temporal. The 2018 EXPORTS field deployment is among the most comprehensive biological pump studies ever conducted. A second deployment to the North Atlantic Ocean occurred in spring 2021, which will be followed by focused work on data synthesis and modeling using the entire EXPORTS data set.