Stallings
Christopher D.
Stallings
Christopher D.
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ArticleBioTIME : a database of biodiversity time series for the Anthropocene(John Wiley & Sons, 2018-07-24) Dornelas, Maria ; Antao, Laura H. ; Moyes, Faye ; Bates, Amanda E. ; Magurran, Anne E. ; Adam, Dusan ; Akhmetzhanova, Asem A. ; Appeltans, Ward ; Arcos, Jose Manuel ; Arnold, Haley ; Ayyappan, Narayanan ; Badihi, Gal ; Baird, Andrew H. ; Barbosa, Miguel ; Barreto, Tiago Egydio ; Bässler, Claus ; Bellgrove, Alecia ; Belmaker, Jonathan ; Benedetti-Cecchi, Lisandro ; Bett, Brian J. ; Bjorkman, Anne D. ; Błazewicz, Magdalena ; Blowes, Shane A. ; Bloch, Christopher P. ; Bonebrake, Timothy C. ; Boyd, Susan ; Bradford, Matt ; Brooks, Andrew J. ; Brown, James H. ; Bruelheide, Helge ; Budy, Phaedra ; Carvalho, Fernando ; Castaneda-Moya, Edward ; Chen, Chaolun Allen ; Chamblee, John F. ; Chase, Tory J. ; Collier, Laura Siegwart ; Collinge, Sharon K. ; Condit, Richard ; Cooper, Elisabeth J. ; Cornelissen, Johannes H. C. ; Cotano, Unai ; Crow, Shannan Kyle ; Damasceno, Gabriella ; Davies, Claire H. ; Davis, Robert A. ; Day, Frank P. ; Degraer, Steven ; Doherty, Tim S. ; Dunn, Timothy E. ; Durigan, Giselda ; Duffy, J. Emmett ; Edelist, Dor ; Edgar, Graham J. ; Elahi, Robin ; Elmendorf, Sarah C. ; Enemar, Anders ; Ernest, S. K. Morgan ; Escribano, Ruben ; Estiarte, Marc ; Evans, Brian S. ; Fan, Tung-Yung ; Farah, Fabiano Turini ; Fernandes, Luiz Loureiro ; Farneda, Fabio Z. ; Fidelis, Alessandra ; Fitt, Robert ; Fosaa, Anna Maria ; Franco, Geraldo Antonio Daher Correa ; Frank, Grace E. ; Fraser, William R. ; García, Hernando ; Gatti, Roberto Cazzolla ; Givan, Or ; Gorgone-Barbosa, Elizabeth ; Gould, William A. ; Gries, Corinna ; Grossman, Gary D. ; Gutierrez, Julio R. ; Hale, Stephen ; Harmon, Mark E. ; Harte, John ; Haskins, Gary ; Henshaw, Donald L. ; Hermanutz, Luise ; Hidalgo, Pamela ; Higuchi, Pedro ; Hoey, Andrew S. ; Hoey, Gert Van ; Hofgaard, Annika ; Holeck, Kristen ; Hollister, Robert D. ; Holmes, Richard ; Hoogenboom, Mia ; Hsieh, Chih-hao ; Hubbell, Stephen P. ; Huettmann, Falk ; Huffard, Christine L. ; Hurlbert, Allen H. ; Ivanauskas, Natalia Macedo ; Janík, David ; Jandt, Ute ; Jazdzewska, Anna ; Johannessen, Tore ; Johnstone, Jill F. ; Jones, Julia ; Jones, Faith A. M. ; Kang, Jungwon ; Kartawijaya, Tasrif ; Keeley, Erin C. ; Kelt, Douglas A. ; Kinnear, Rebecca ; Klanderud, Kari ; Knutsen, Halvor ; Koenig, Christopher C. ; Kortz, Alessandra R. ; Kral, Kamil ; Kuhnz, Linda A. ; Kuo, Chao-Yang ; Kushner, David J. ; Laguionie-Marchais, Claire ; Lancaster, Lesley T. ; Lee, Cheol Min ; Lefcheck, Jonathan S. ; Levesque, Esther ; Lightfoot, David ; Lloret, Francisco ; Lloyd, John D. ; Lopez-Baucells, Adria ; Louzao, Maite ; Madin, Joshua S. ; Magnusson, Borgbor ; Malamud, Shahar ; Matthews, Iain ; McFarland, Kent P. ; McGill, Brian ; McKnight, Diane ; McLarney, William O. ; Meador, Jason ; Meserve, Peter L. ; Metcalfe, Daniel J. ; Meyer, Christoph F. J. ; Michelsen, Anders ; Milchakova, Nataliya ; Moens, Tom ; Moland, Even ; Moore, Jon ; Moreira, Carolina Mathias ; Muller, Jorg ; Murphy, Grace ; Myers-Smith, Isla H. ; Myster, Randall W. ; Naumov, Andrew ; Neat, Francis ; Nelson, James A. ; Nelson, Michael Paul ; Newton, Stephen F. ; Norden, Natalia ; Oliver, Jeffrey C. ; Olsen, Esben M. ; Onipchenko, Vladimir G. ; Pabis, Krzysztof ; Pabst, Robert J. ; Paquette, Alain ; Pardede, Sinta ; Paterson, David M. ; Pelissier, Raphael ; Penuelas, Josep ; Perez-Matus, Alejandro ; Pizarro, Oscar ; Pomati, Francesco ; Post, Eric ; Prins, Herbert H. T. ; Priscu, John C. ; Provoost, Pieter ; Prudic, Kathleen L. ; Pulliainen, Erkki ; Ramesh, B. B. ; Ramos, Olivia Mendivil ; Rassweiler, Andrew ; Rebelo, Jose Eduardo ; Reed, Daniel C. ; Reich, Peter B. ; Remillard, Suzanne M. ; Richardson, Anthony J. ; Richardson, J. Paul ; Rijn, Itai van ; Rocha, Ricardo ; Rivera-Monroy, Victor H. ; Rixen, Christian ; Robinson, Kevin P. ; Rodrigues, Ricardo Ribeiro ; Rossa-Feres, Denise de Cerqueira ; Rudstam, Lars ; Ruhl, Henry A. ; Ruz, Catalina S. ; Sampaio, Erica M. ; Rybicki, Nancy ; Rypel, Andrew ; Sal, Sofia ; Salgado, Beatriz ; Santos, Flavio A. M. ; Savassi-Coutinho, Ana Paula ; Scanga, Sara ; Schmidt, Jochen ; Schooley, Robert ; Setiawan, Fakhrizal ; Shao, Kwang-Tsao ; Shaver, Gaius R. ; Sherman, Sally ; Sherry, Thomas W. ; Sicinski, Jacek ; Sievers, Caya ; da Silva, Ana Carolina ; da Silva, Fernando Rodrigues ; Silveira, Fabio L. ; Slingsby, Jasper ; Smart, Tracey ; Snell, Sara J. ; Soudzilovskaia, Nadejda A. ; Souza, Gabriel B. G. ; Souza, Flaviana Maluf ; Souza, Vinícius Castro ; Stallings, Christopher D. ; Stanforth, Rowan ; Stanley, Emily H. ; Sterza, Jose Mauro ; Stevens, Maarten ; Stuart-Smith, Rick ; Suarez, Yzel Rondon ; Supp, Sarah ; Tamashiro, Jorge Yoshio ; Tarigan, Sukmaraharja ; Thiede, Gary P. ; Thorn, Simon ; Tolvanen, Anne ; Toniato, Maria Teresa Zugliani ; Totland, Orjan ; Twilley, Robert R. ; Vaitkus, Gediminas ; Valdivia, Nelson ; Vallejo, Martha Isabel ; Valone, Thomas J. ; Van Colen, Carl ; Vanaverbeke, Jan ; Venturoli, Fabio ; Verheye, Hans M. ; Vianna, Marcelo ; Vieira, Rui P. ; Vrska, Tomas ; Vu, Con Quang ; Vu, Lien Van ; Waide, Robert B. ; Waldock, Conor ; Watts, David ; Webb, Sara ; Wesołowski, Tomasz ; White, Ethan P. ; Widdicombe, Claire E. ; Wilgers, Wilgers ; Williams, Richard ; Williams, Stefan B. ; Williamson, Mark ; Willig, Michael R. ; Willis, Trevor J. ; Wipf, Sonja ; Woods, Kerry D. ; Woehler, Eric ; Zawada, Kyle ; Zettler, Michael L.The BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community‐led open‐source database of biodiversity time series. Our goal is to accelerate and facilitate quantitative analysis of temporal patterns of biodiversity in the Anthropocene. The database contains 8,777,413 species abundance records, from assemblages consistently sampled for a minimum of 2 years, which need not necessarily be consecutive. In addition, the database contains metadata relating to sampling methodology and contextual information about each record. BioTIME is a global database of 547,161 unique sampling locations spanning the marine, freshwater and terrestrial realms. Grain size varies across datasets from 0.0000000158 km2 (158 cm2) to 100 km2 (1,000,000,000,000 cm2). BioTIME records span from 1874 to 2016. The minimal temporal grain across all datasets in BioTIME is a year. BioTIME includes data from 44,440 species across the plant and animal kingdoms, ranging from plants, plankton and terrestrial invertebrates to small and large vertebrates.
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DatasetNon-oyster species counts and sizes from caged and non-caged juvenile oyster experiment using two cohorts from Apalachicola Bay and Ocholckonee Bay stock(Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2020-10-05) Kimbro, David L. ; Stallings, Christopher D. ; White, J WilsonNon-oyster species counts and sizes from caged and non-caged juvenile oyster experiment using two cohorts from Apalachicola Bay and Ocholckonee Bay stock. Experiments took place from 2013 to 2016 and in 2019. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/821771
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DatasetOrganism sizes on oyster reef quadrats from surveys in Apalachicola Bay and Ocholckonee Bay, FL, 2013-2019(Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2020-10-05) Kimbro, David L. ; Stallings, Christopher D. ; White, J WilsonOrganism sizes on oyster reef quadrats from surveys in Apalachicola Bay and Ocholckonee Bay, Florida, 2013-2019. Reported are counts, sizes (mm) and relative density. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/821081
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DatasetThe status of juvenile oysters from a caged and non-caged recruitment experiments using two cohorts from Apalachicola Bay and Ocholckonee Bay stock, 2013-2016 and 2019(Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2020-10-05) Kimbro, David L. ; Stallings, Christopher D. ; White, J WilsonThe status of juvenile oysters from a caged and non-caged recruitment experiments using two cohorts from Apalachicola Bay and Ocholckonee Bay stock. Reported data include spat density, the numbers of live recruits and 'gapers' on a spat or substrate, 2013-2016 and 2019. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/821793
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DatasetOysters size and presence or absence of disease at intertidal and subtidal reefs in Apalachicola Bay and Ocholckonee Bays, FL, July-August 2016(Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2020-10-05) Kimbro, David L. ; Stallings, Christopher D. ; White, J WilsonOysters size and presence or absence of disease at intertidal and subtidal reefs in Apalachicola Bay and Ocholckonee Bays, Florida, July-August 2016 For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/821783
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DatasetWater quality data from surveys, experiments and the NERR data sonde, sub-tropical estuarine waters, subtidal and intertidal in Apalachicola Bay and Ocholckonee Bay, Florida, 2013-2019(Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2020-10-05) Kimbro, David L. ; Stallings, Christopher D. ; White, J WilsonWater quality data from surveys, experiments and the National Estuarine Research Reserve (NERR) data sonde, sub-tropical estuarine waters, subtidal and intertidal in Apalachicola Bay and Ocholckonee Bay, Florida, 2013-2019. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/821061
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DatasetSurveys of inhabitants on the intertidal and subtidal oyster reef in Apalachicola Bay and Ocholckonee Bay, FL, 2013-2019(Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu, 2020-10-05) Kimbro, David L. ; Stallings, Christopher D. ; White, J WilsonSurveys of inhabitants on the intertidal and subtidal oyster reef in Apalachicola Bay and Ocholckonee Bay, Florida, 2013-2019. This data includes the total numbers of adults, spat, live oysters, new and old gapers, and whether mussels, barnacles crabs, or gastropods were present. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/821071
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PreprintBiomass transfer subsidizes nitrogen to offshore food webs( 2013-03-17) Nelson, James A. ; Stallings, Christopher D. ; Landing, William M. ; Chanton, Jeffrey P.We evaluated the potential contribution of allochthonous biomass subsidies to the upper trophic levels of offshore food webs in the northeastern Gulf of Mexico (GOM). We made this evaluation considering nitrogen, an essential and often limiting nutrient in coastal ecosystems, to estimate the potential production of within-ecosystem biomass relative to the known import of biomass from an adjacent seagrass dominated ecosystem. When adjusted for trophic transfer efficiency, we found the biomass subsidy from a single species (pinfish, Lagodon rhomboides) from neashore seagrass habitat to the offshore GOM to be greater than the amount of nitrogen exported by a two major rivers and local submarine ground water discharge. Our calculations show that seagrass-derived biomass accounts for ~25% of the total potential production in the northeastern GOM. This estimate is in agreement with a previous study that found 18.5-25% of the biomass in a predatory reef fish was derived from seagrass biomass inputs. These results indicate that all of the sources we consider account for the majority of the nitrogen available to the food web in the northeastern GOM. Our approach could be adapted to other coupled ecosystems to determine the relative importance of biomass subsidies to coastal ocean food 48 webs.