Now showing items 2692-2711 of 7459

  • Genetic variation at aryl hydrocarbon receptor (AHR) loci in populations of Atlantic killifish (Fundulus heteroclitus) inhabiting polluted and reference habitats 

    Reitzel, Adam M.; Karchner, Sibel I.; Franks, Diana G.; Evans, Brad R.; Nacci, Diane E.; Champlin, Denise; Vieira, Veronica M.; Hahn, Mark E. (BioMed Central, 2014-01-14)
    The non-migratory killifish Fundulus heteroclitus inhabits clean and polluted environments interspersed throughout its range along the Atlantic coast of North America. Several populations of this species have successfully ...
  • The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2 

    Scott, Kathleen M.; Sievert, Stefan M.; Abril, Fereniki N.; Ball, Lois A.; Barrett, Chantell J.; Blake, Rodrigo A.; Boller, Amanda J.; Chain, Patrick S. G.; Clark, Justine A.; Davis, Carisa R.; Detter, Chris; Do, Kimberly F.; Dobrinski, Kimberly P.; Faza, Brandon I.; Fitzpatrick, Kelly A.; Freyermuth, Sharyn K.; Harmer, Tara L.; Hauser, Loren J.; Hugler, Michael; Kerfeld, Cheryl A.; Klotz, Martin G.; Kong, William W.; Land, Miriam L.; Lapidus, Alla; Larimer, Frank W.; Longo, Dana L.; Lucas, Susan; Malfatti, Stephanie A.; Massey, Steven E.; Martin, Darlene D.; McCuddin, Zoe; Meyer, Folker; Moore, Jessica L.; Ocampo, Luis H.; Paul, John H.; Paulsen, Ian T.; Reep, Douglas K.; Ren, Qinghu; Ross, Rachel L.; Sato, Priscila Y.; Thomas, Phaedra; Tinkham, Lance E.; Zeruth, Gary T. (Public Library of Science (PLoS), 2006-11-14)
    Presented here is the complete genome sequence of Thiomicrospira crunogena XCL-2, representative of ubiquitous chemolithoautotrophic sulfur-oxidizing bacteria isolated from deep-sea hydrothermal vents. This gammaproteob ...
  • Genome of the epsilonproteobacterial chemolithoautotroph Sulfurimonas denitrificans 

    Sievert, Stefan M.; Scott, Kathleen M.; Klotz, Martin G.; Chain, Patrick S. G.; Hauser, Loren J.; Hemp, James; Hugler, Michael; Land, Miriam L.; Lapidus, Alla; Larimer, Frank W.; Lucas, Susan; Malfatti, Stephanie A.; Meyer, Folker; Paulsen, Ian T.; Ren, Qinghu; Simon, Jorg; USF Genomics Class (American Society for Microbiology, 2007-12-07)
    Sulfur-oxidizing epsilonproteobacteria are common in a variety of sulfidogenic environments. These autotrophic and mixotrophic sulfur-oxidizing bacteria are believed to contribute substantially to the oxidative portion of ...
  • Genome reconstructions indicate the partitioning of ecological functions inside a phytoplankton bloom in the Amundsen Sea, Antarctica 

    Delmont, Tom O.; Eren, A. Murat; Vineis, Joseph H.; Post, Anton F. (Frontiers Media, 2015-10-26)
    Antarctica polynyas support intense phytoplankton blooms, impacting their environment by a substantial depletion of inorganic carbon and nutrients. These blooms are dominated by the colony-forming haptophyte Phaeocystis ...
  • Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita 

    Abad, Pierre; Gouzy, Jerome; Aury, Jean-Marc; Castagnone-Sereno, Philippe; Danchin, Etienne G. J.; Deleury, Emeline; Perfus-Barbeoch, Laetitia; Anthouard, Veronique; Artiguenave, Francois; Blok, Vivian C.; Caillaud, Marie-Cecile; Coutinho, Pedro M.; Da Silva, Corinne; De Luca, Francesca; Deau, Florence; Esquibet, Magali; Flutre, Timothe; Goldstone, Jared V.; Hamamouch, Noureddine; Hewezi, Tarek; Jaillon, Olivier; Jubin, Claire; Leonetti, Paola; Magliano, Marc; Maier, Tom R.; Markov, Gabriel V.; McVeigh, Paul; Pesole, Graziano; Poulain, Julie; Robinson-Rechavi, Marc; Sallet, Erika; Segurens, Beatrice; Steinbach, Delphine; Tytgat, Tom; Ugarte, Edgardo; van Ghelder, Cyril; Veronico, Pasqua; Baum, Thomas J.; Blaxter, Mark; Bleve-Zacheo, Teresa; Davis, Eric L; Ewbank, Jonathan J.; Favery, Bruno; Grenier, Eric; Henrissat, Bernard; Jones, John T.; Laudet, Vincent; Maule, Aaron G.; Quesneville, Hadi; Rosso, Marie-Noelle; Schiex, Thomas; Smant, Geert; Weissenbach, Jean; Wincker, Patrick (Nature Publishing Group, 2008-07-27)
    Plant-parasitic nematodes are major agricultural pests worldwide and novel approaches to control them are sorely needed. We report the draft genome sequence of the root-knot nematode Meloidogyne incognita, a biotrophic ...
  • Genome structure of bdelloid rotifers : shaped by asexuality or desiccation? 

    Gladyshev, Eugene A.; Arkhipova, Irina R. (2010-01)
    Bdelloid rotifers are microscopic invertebrate animals best known for their ancient asexuality and the ability to survive desiccation at any life stage. Both factors are expected to have a profound influence on their ...
  • Genomic analysis of carbon source metabolism of Shewanella oneidensis MR-1 : predictions versus experiments 

    Serres, Margrethe H.; Riley, Monica (American Society for Microbiology, 2006-07)
    Genomic sequences have been used to find the genetic foundation for carbon source metabolism in Shewanella oneidensis MR-1. Annotated S. oneidensis MR-1 gene products were examined for their sequence similarity to enzymes ...
  • Genomic and metabolic diversity of Marine Group I Thaumarchaeota in the mesopelagic of two subtropical gyres 

    Swan, Brandon K.; Chaffin, Mark D.; Martinez-Garcia, Manuel; Morrison, Hilary G.; Field, Erin K.; Poulton, Nicole J.; Masland, E. Dashiell P.; Harris, Christopher C.; Sczyrba, Alexander; Chain, Patrick S. G.; Koren, Sergey; Woyke, Tanja; Stepanauskas, Ramunas (Public Library of Science, 2014-04-17)
    Marine Group I (MGI) Thaumarchaeota are one of the most abundant and cosmopolitan chemoautotrophs within the global dark ocean. To date, no representatives of this archaeal group retrieved from the dark ocean have been ...
  • Genomic and transcriptomic evidence for scavenging of diverse organic compounds by widespread deep-sea archaea 

    Li, Meng; Baker, Brett J.; Anantharaman, Karthik; Jain, Sunit; Breier, John A.; Dick, Gregory J. (Nature Publishing Group, 2015-11-17)
    Microbial activity is one of the most important processes to mediate the flux of organic carbon from the ocean surface to the seafloor. However, little is known about the microorganisms that underpin this key step of the ...
  • Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga 

    Flot, Jean-Francois; Hespeels, Boris; Li, Xiang; Noel, Benjamin; Arkhipova, Irina R.; Danchin, Etienne G. J.; Hejno, Andreas; Henrissat, Bernard; Koszul, Romain; Aury, Jean-Marc; Barbe, Valerie; Barthelemy, Roxane-Marie; Bast, Jens; Bazykin, Georgii A.; Chabrol, Olivier; Couloux, Arnaud; Da Rocha, Martine; Da Silva, Corinne; Gladyshev, Eugene A.; Gouret, Philippe; Hallatschek, Oskar; Hecox-Lea, Bette; Labadie, Karine; Lejeune, Benjamin; Piskurek, Oliver; Poulain, Julie; Rodriguez, Fernando; Ryan, Joseph F.; Vakhrusheva, Olga A.; Wajnberg, Eric; Wirth, Benedicte; Yushenova, Irina A.; Kellis, Manolis; Kondrashov, Alexey S.; Mark Welch, David B.; Pontarotti, Pierre; Weissenbach, Jean; Wincker, Patrick; Jaillon, Olivier; Van Doninck, Karine (Nature Publishing Group, 2013-07-21)
    Loss of sexual reproduction is considered an evolutionary dead end for metazoans, but bdelloid rotifers challenge this view as they appear to have persisted asexually for millions of years1. Neither male sex organs nor ...
  • Genomic impact of eukaryotic transposable elements 

    Arkhipova, Irina R.; Batzer, Mark A.; Brosius, Juergen; Feschotte, Cedric; Moran, John V.; Schmitz, Jurgen; Jurka, Jerzy (BioMed Central, 2012-11-21)
    The third international conference on the genomic impact of eukaryotic transposable elements (TEs) was held 24 to 28 February 2012 at the Asilomar Conference Center, Pacific Grove, CA, USA. Sponsored in part by the National ...
  • The Genomic Standards Consortium 

    Field, Dawn; Amaral-Zettler, Linda A.; Cochrane, Guy R.; Cole, James R.; Dawyndt, Peter; Garrity, George M.; Gilbert, Jack A.; Glockner, Frank Oliver; Hirschman, Lynette; Karsch-Mizrachi, Ilene; Klenk, Hans-Peter; Knight, Rob; Kottmann, Renzo; Kyrpides, Nikos C.; Meyer, Folker; San Gil, Inigo; Sansone, Susanna-Assunta; Schriml, Lynn M.; Sterk, Peter; Tatusova, Tatiana; Ussery, David W.; White, Owen; Wooley, John (Public Library of Science, 2011-06-21)
    A vast and rich body of information has grown up as a result of the world's enthusiasm for 'omics technologies. Finding ways to describe and make available this information that maximise its usefulness has become a major ...
  • The genomic standards consortium : bringing standards to life for microbial ecology 

    Yilmaz, Pelin; Gilbert, Jack A.; Knight, Rob; Amaral-Zettler, Linda A.; Karsch-Mizrachi, Ilene; Cochrane, Guy R.; Nakamura, Yasukazu; Sansone, Susanna-Assunta; Glockner, Frank Oliver; Field, Dawn (Nature Publishing Group, 2011-04-07)
    Interest in sampling of diverse environments, combined with advances in high-throughput sequencing, vastly accelerates the pace at which new genomes and metagenomes are generated. For example, as of January 2011, 12 ...
  • Genomic Standards Consortium projects 

    Field, Dawn; Sterk, Peter; Kottmann, Renzo; De Smet, Wim; Amaral-Zettler, Linda A.; Cochrane, Guy R.; James, Cole R.; Davies, Neil; Dawyndt, Peter; Garrity, George M.; Gilbert, Jack A.; Glockner, Frank Oliver; Hirschman, Lynette; Klenk, Hans-Peter; Knight, Rob; Kyrpides, Nikos C.; Meyer, Folker; Karsch-Mizrachi, Ilene; Morrison, Norman; Robbins, Robert J.; San Gil, Inigo; Sansone, Susanna-Assunta; Schriml, Lynn M.; Tatusova, Tatiana; Ussery, David W.; Yilmaz, Pelin; White, Owen; Wooley, John; Caporaso, Gregory (Genomic Standards Consortium, 2014)
    The Genomic Standards Consortium (GSC) is an open-membership community working towards the development, implementation and harmonization of standards in the field of genomics. The mission of the GSC is to improve digital ...
  • Genomic survey of candidate stress-response genes in the estuarine anemone Nematostella vectensis 

    Reitzel, Adam M.; Sullivan, James C.; Traylor-Knowles, Nikki; Finnerty, John R. (Marine Biological Laboratory, 2008-06)
    Salt marshes are challenging habitats due to natural variability in key environmental parameters including temperature, salinity, ultraviolet light, oxygen, sulfides, and reactive oxygen species. Compounding this natural ...
  • Genomic survey of the non-cultivatable opportunistic human pathogen, Enterocytozoon bieneusi 

    Akiyoshi, Donna E.; Morrison, Hilary G.; Lei, Shi; Feng, Xiaochuan; Zhang, Quanshun; Corradi, Nicolas; Mayanja, Harriet; Tumwine, James K.; Keeling, Patrick J.; Weiss, Louis M.; Tzipori, Saul (Public Library of Science, 2009-01-09)
    Enterocytozoon bieneusi is the most common microsporidian associated with human disease, particularly in the immunocompromised population. In the setting of HIV infection, it is associated with diarrhea and wasting syndrome. ...
  • Genomics of an extreme psychrophile, Psychromonas ingrahamii 

    Riley, Monica; Staley, James T.; Danchin, Antoine; Wang, Ting Zhang; Brettin, Thomas S.; Hauser, Loren J.; Land, Miriam L.; Thompson, Linda S. (BioMed Central, 2008-05-06)
    The genome sequence of the sea-ice bacterium Psychromonas ingrahamii 37, which grows exponentially at -12C, may reveal features that help to explain how this extreme psychrophile is able to grow at such low temperatures. ...
  • Genotypic diversity within a natural coastal bacterioplankton population 

    Thompson, Janelle R.; Pacocha, Sarah E.; Pharino, Chanathip; Klepac-Ceraj, Vanja; Hunt, Dana E.; Benoit, Jennifer; Sarma-Rupavtarm, Ramahi; Distel, Daniel L.; Polz, Martin F. (2005-01-04)
    The genomic diversity and relative importance of unique genotypes within natural bacterial populations has remained largely unknown. Here, we analyze the diversity and annual dynamics of a group of coastal bacterioplankton ...
  • Geoacoustic inversion by mode amplitude perturbation 

    Poole, Travis L.; Frisk, George V.; Lynch, James F.; Pierce, Allan D. (Acoustical Society of America, 2008-02)
    This paper introduces a perturbative inversion algorithm for determining sea floor acoustic properties, which uses modal amplitudes as input data. Perturbative inverse methods have been used in the past to estimate bottom ...
  • Geoacoustic inversion by mode amplitude perturbation 

    Poole, Travis L.; Frisk, George V.; Lynch, James F.; Pierce, Allan D. (Acoustical Society of America, 2008-02)
    This paper introduces a perturbative inversion algorithm for determining sea floor acoustic properties, which uses modal amplitudes as input data. Perturbative inverse methods have been used in the past to estimate bottom ...