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  • Field, Dawn; Amaral-Zettler, Linda A.; Cochrane, Guy R.; Cole, James R.; Dawyndt, Peter; Garrity, George M.; Gilbert, Jack A.; Glockner, Frank Oliver; Hirschman, Lynette; Karsch-Mizrachi, Ilene; Klenk, Hans-Peter; Knight, Rob; Kottmann, Renzo; Kyrpides, Nikos C.; Meyer, Folker; San Gil, Inigo; Sansone, Susanna-Assunta; Schriml, Lynn M.; Sterk, Peter; Tatusova, Tatiana; Ussery, David W.; White, Owen; Wooley, John (Public Library of Science, 2011-06-21)
    A vast and rich body of information has grown up as a result of the world's enthusiasm for 'omics technologies. Finding ways to describe and make available this information that maximise its usefulness has become a major ...
  • Yilmaz, Pelin; Gilbert, Jack A.; Knight, Rob; Amaral-Zettler, Linda A.; Karsch-Mizrachi, Ilene; Cochrane, Guy R.; Nakamura, Yasukazu; Sansone, Susanna-Assunta; Glockner, Frank Oliver; Field, Dawn (Nature Publishing Group, 2011-04-07)
    Interest in sampling of diverse environments, combined with advances in high-throughput sequencing, vastly accelerates the pace at which new genomes and metagenomes are generated. For example, as of January 2011, 12 ...
  • Reitzel, Adam M.; Sullivan, James C.; Traylor-Knowles, Nikki; Finnerty, John R. (Marine Biological Laboratory, 2008-06)
    Salt marshes are challenging habitats due to natural variability in key environmental parameters including temperature, salinity, ultraviolet light, oxygen, sulfides, and reactive oxygen species. Compounding this natural ...
  • Akiyoshi, Donna E.; Morrison, Hilary G.; Lei, Shi; Feng, Xiaochuan; Zhang, Quanshun; Corradi, Nicolas; Mayanja, Harriet; Tumwine, James K.; Keeling, Patrick J.; Weiss, Louis M.; Tzipori, Saul (Public Library of Science, 2009-01-09)
    Enterocytozoon bieneusi is the most common microsporidian associated with human disease, particularly in the immunocompromised population. In the setting of HIV infection, it is associated with diarrhea and wasting syndrome. ...
  • Thompson, Janelle R.; Pacocha, Sarah E.; Pharino, Chanathip; Klepac-Ceraj, Vanja; Hunt, Dana E.; Benoit, Jennifer; Sarma-Rupavtarm, Ramahi; Distel, Daniel L.; Polz, Martin F. (2005-01-04)
    The genomic diversity and relative importance of unique genotypes within natural bacterial populations has remained largely unknown. Here, we analyze the diversity and annual dynamics of a group of coastal bacterioplankton ...
  • Poole, Travis L. (Massachusetts Institute of Technology and Woods Hole Oceanographic Institution, 2007-02)
    This thesis introduces an algorithm for inverting for the geoacoustic properties of the seafloor in shallow water. The input data required by the algorithm are estimates of the amplitudes of the normal modes excited by ...
  • Poole, Travis L.; Frisk, George V.; Lynch, James F.; Pierce, Allan D. (Acoustical Society of America, 2008-02)
    This paper introduces a perturbative inversion algorithm for determining sea floor acoustic properties, which uses modal amplitudes as input data. Perturbative inverse methods have been used in the past to estimate bottom ...
  • Poole, Travis L.; Frisk, George V.; Lynch, James F.; Pierce, Allan D. (Acoustical Society of America, 2008-02)
    This paper introduces a perturbative inversion algorithm for determining sea floor acoustic properties, which uses modal amplitudes as input data. Perturbative inverse methods have been used in the past to estimate bottom ...
  • Becker, Kyle M. (Massachusetts Institute of Technology and Woods Hole Oceanographic Institution, 2002-02)
    Sound propagation in shallow water is highly dependent on the interaction of the sound field with the bottom. In order to fully understand this problem, it is necessary to obtain reliable estimates of bottom geoacoustic ...
  • Simmons, Sheri L. (Massachusetts Institute of Technology and Woods Hole Oceanographic Institution, 2006-06)
    Magnetotactic bacteria (MTB) biomineralize intracellular membrane-bound crystals of magnetite (Fe3O4) or greigite (Fe3S4), and are abundant in the suboxic to anoxic zones of stratified marine environments worldwide. Their ...
  • Hauri, Erik H. (Massachusetts Institute of Technology and Woods Hole Oceanographic Institution, 1992-09)
    Variations in the abundances of elements and radiogenic isotopes in mantle derived peridotites and volcanic rocks are chemical integrals over time, space, and process, which ultimately contain information about the role ...
  • Dulaiova, Henrieta; Gonneea, Meagan E.; Henderson, Paul B.; Charette, Matthew A. (2007-12-13)
    Submarine groundwater discharge (SGD), in form of springs and diffuse seepage, has long been recognized as a source of chemical constituents to the coastal ocean. Because groundwater is two to four orders of magnitude ...
  • Warren, Jessica M. (Massachusetts Institute of Technology and Woods Hole Oceanographic Institution, 2007-09)
    I provide constraints on mantle convection through observations of the rheology and composition of the oceanic upper mantle. Convection cannot be directly observed, yet is a fundamental part of the plate tectonic cycle. ...
  • Workman, Rhea K. (Massachusetts Institute of Technology and Woods Hole Oceanographic Institution, 2005-06)
    This thesis uses trace elements and radiogenic isotope tracers to define elemental abundances in reservoirs of the Earth's mantle, including EM2 (the Enriched Mantle 2), as seen in the Samoan hotspot track, and DMM (the ...
  • Morford, Jennifer L.; Kalnejais, Linda H.; Helman, Peter; Yen, Gloria; Reinard, Melissa (2008-02-08)
    Although there have been many surface water and water column silver (Ag) analyses in the ocean, the absence of high resolution pore water and solid phase Ag profiles has hampered our understanding of its oceanic geochemical ...
  • Fagel, Nathalie; Bertrand, Sebastien; Mattielli, Nadine; Gilson, Delphine; Chirinos, Luis; Lepoint, Gilles; Urrutia, Roberto (2009-10-29)
    In this paper, we compare the elemental and isotopic (C, N, Pb) geochemistry of lake sediments from two contrasted environments in South-Central Chile. The first lake, Laguna Chica de San Pedro (LCSP), is situated in the ...
  • Carlson, Anders E.; Clark, Peter U.; Haley, Brian A.; Klinkhammer, Gary P.; Simmons, Kathleen; Brook, Edward J.; Meissner, Katrin J. (2006-12-19)
    The Younger Dryas cold interval represents a time when much of the Northern Hemisphere cooled from ~12.9 to 11.5 kiloyears before present. The cause of this event, which has long been viewed as the canonical example of ...
  • Limmer, David R.; Boning, Philipp; Giosan, Liviu; Ponton, Camilo; Kohler, Cornelia M.; Cooper, Matthew J.; Tabrez, Ali R.; Clift, Peter D. (American Geophysical Union, 2012-01-14)
    We present a multiproxy geochemical analysis of two cores recovered from the Indus Shelf spanning the Early Holocene to Recent (<14 ka). Indus-23 is located close to the modern Indus River, while Indus-10 is positioned ...
  • Walther, Benjamin D.; Thorrold, Simon R.; Olney, John E. (American Fisheries Society, 2008-01-03)
    Population connectivity is a critical component in the life history dynamics of anadromous fishes and in the persistence of local populations. We used geochemical signatures in the otoliths of American shad Alosa sapidissima ...
  • Konter, Jasper G.; Staudigel, Hubert; Blichert-Toft, J.; Hanan, B. B.; Polve, M.; Davies, G. R.; Shimizu, Nobumichi; Schiffman, P. (American Geophysical Union, 2009-02-03)
    Ocean intraplate volcanoes (OIVs) are formed in a sequence of stages, from large to small, that involve a systematic progression in mantle melting in terms of volumes and melt fractions with concomitant distinct mantle ...

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