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  • Bockheim, James G.; Kurz, Mark D.; Soule, Samuel A.; Burke, Andrea (2009-05)
    Nonsorted polygons with sand-filled wedges were investigated in lower and central Beacon Valley, Antarctica (77.82ºS, 160.67ºE) using field observations coupled with a 2-m resolution Digital Elevation Model and a ...
  • Ferguson, Edwin Louis (Massachusetts Institute of Technology and Woods Hole Oceanographic Institution, 1985-05)
    The cell lineages of the nematode Caenorhabditis elegana are essentially invariant among individuals. We have begun an attempt to understand the genetic specification of one particular cell lineage, that of the hermaphrodite ...
  • Vigliola, Laurent; Doherty, Peter J.; Meekan, Mark G.; Drown, Devin M.; Jones, M. Elizabeth; Barber, Paul H. (Ecological Society of America, 2007-05)
    Longitudinal sampling of four cohorts of Neopomacentrus filamentosus, a common tropical damselfish from Dampier Archipelago, Western Australia, revealed the evolution of size structure after settlement. Light traps collected ...
  • Brand, Larry E. (Massachusetts Institute of Technology and Woods Hole Oceanographic Institution, 1980-01)
    The acclimated asexual reproduction rates of many clones of Emiliania huxleyi (82), Gephrocapsa oceanica (19), Cyclococcolithina leptopora (31), Prorocentrum micans (28), Dissodinium lunula (22), Thoracosphaera heimi ...
  • Scott, Kathleen M.; Sievert, Stefan M.; Abril, Fereniki N.; Ball, Lois A.; Barrett, Chantell J.; Blake, Rodrigo A.; Boller, Amanda J.; Chain, Patrick S. G.; Clark, Justine A.; Davis, Carisa R.; Detter, Chris; Do, Kimberly F.; Dobrinski, Kimberly P.; Faza, Brandon I.; Fitzpatrick, Kelly A.; Freyermuth, Sharyn K.; Harmer, Tara L.; Hauser, Loren J.; Hugler, Michael; Kerfeld, Cheryl A.; Klotz, Martin G.; Kong, William W.; Land, Miriam L.; Lapidus, Alla; Larimer, Frank W.; Longo, Dana L.; Lucas, Susan; Malfatti, Stephanie A.; Massey, Steven E.; Martin, Darlene D.; McCuddin, Zoe; Meyer, Folker; Moore, Jessica L.; Ocampo, Luis H.; Paul, John H.; Paulsen, Ian T.; Reep, Douglas K.; Ren, Qinghu; Ross, Rachel L.; Sato, Priscila Y.; Thomas, Phaedra; Tinkham, Lance E.; Zeruth, Gary T. (Public Library of Science (PLoS), 2006-11-14)
    Presented here is the complete genome sequence of Thiomicrospira crunogena XCL-2, representative of ubiquitous chemolithoautotrophic sulfur-oxidizing bacteria isolated from deep-sea hydrothermal vents. This gammaproteob ...
  • Sievert, Stefan M.; Scott, Kathleen M.; Klotz, Martin G.; Chain, Patrick S. G.; Hauser, Loren J.; Hemp, James; Hugler, Michael; Land, Miriam L.; Lapidus, Alla; Larimer, Frank W.; Lucas, Susan; Malfatti, Stephanie A.; Meyer, Folker; Paulsen, Ian T.; Ren, Qinghu; Simon, Jorg; USF Genomics Class (American Society for Microbiology, 2007-12-07)
    Sulfur-oxidizing epsilonproteobacteria are common in a variety of sulfidogenic environments. These autotrophic and mixotrophic sulfur-oxidizing bacteria are believed to contribute substantially to the oxidative portion of ...
  • Abad, Pierre; Gouzy, Jerome; Aury, Jean-Marc; Castagnone-Sereno, Philippe; Danchin, Etienne G. J.; Deleury, Emeline; Perfus-Barbeoch, Laetitia; Anthouard, Veronique; Artiguenave, Francois; Blok, Vivian C.; Caillaud, Marie-Cecile; Coutinho, Pedro M.; Da Silva, Corinne; De Luca, Francesca; Deau, Florence; Esquibet, Magali; Flutre, Timothe; Goldstone, Jared V.; Hamamouch, Noureddine; Hewezi, Tarek; Jaillon, Olivier; Jubin, Claire; Leonetti, Paola; Magliano, Marc; Maier, Tom R.; Markov, Gabriel V.; McVeigh, Paul; Pesole, Graziano; Poulain, Julie; Robinson-Rechavi, Marc; Sallet, Erika; Segurens, Beatrice; Steinbach, Delphine; Tytgat, Tom; Ugarte, Edgardo; van Ghelder, Cyril; Veronico, Pasqua; Baum, Thomas J.; Blaxter, Mark; Bleve-Zacheo, Teresa; Davis, Eric L; Ewbank, Jonathan J.; Favery, Bruno; Grenier, Eric; Henrissat, Bernard; Jones, John T.; Laudet, Vincent; Maule, Aaron G.; Quesneville, Hadi; Rosso, Marie-Noelle; Schiex, Thomas; Smant, Geert; Weissenbach, Jean; Wincker, Patrick (Nature Publishing Group, 2008-07-27)
    Plant-parasitic nematodes are major agricultural pests worldwide and novel approaches to control them are sorely needed. We report the draft genome sequence of the root-knot nematode Meloidogyne incognita, a biotrophic ...
  • Gladyshev, Eugene A.; Arkhipova, Irina R. (2010-01)
    Bdelloid rotifers are microscopic invertebrate animals best known for their ancient asexuality and the ability to survive desiccation at any life stage. Both factors are expected to have a profound influence on their ...
  • Serres, Margrethe H.; Riley, Monica (American Society for Microbiology, 2006-07)
    Genomic sequences have been used to find the genetic foundation for carbon source metabolism in Shewanella oneidensis MR-1. Annotated S. oneidensis MR-1 gene products were examined for their sequence similarity to enzymes ...
  • Flot, Jean-Francois; Hespeels, Boris; Li, Xiang; Noel, Benjamin; Arkhipova, Irina R.; Danchin, Etienne G. J.; Hejno, Andreas; Henrissat, Bernard; Koszul, Romain; Aury, Jean-Marc; Barbe, Valerie; Barthelemy, Roxane-Marie; Bast, Jens; Bazykin, Georgii A.; Chabrol, Olivier; Couloux, Arnaud; Da Rocha, Martine; Da Silva, Corinne; Gladyshev, Eugene A.; Gouret, Philippe; Hallatschek, Oskar; Hecox-Lea, Bette; Labadie, Karine; Lejeune, Benjamin; Piskurek, Oliver; Poulain, Julie; Rodriguez, Fernando; Ryan, Joseph F.; Vakhrusheva, Olga A.; Wajnberg, Eric; Wirth, Benedicte; Yushenova, Irina A.; Kellis, Manolis; Kondrashov, Alexey S.; Mark Welch, David B.; Pontarotti, Pierre; Weissenbach, Jean; Wincker, Patrick; Jaillon, Olivier; Van Doninck, Karine (Nature Publishing Group, 2013-07-21)
    Loss of sexual reproduction is considered an evolutionary dead end for metazoans, but bdelloid rotifers challenge this view as they appear to have persisted asexually for millions of years1. Neither male sex organs nor ...
  • Arkhipova, Irina R.; Batzer, Mark A.; Brosius, Juergen; Feschotte, Cedric; Moran, John V.; Schmitz, Jurgen; Jurka, Jerzy (BioMed Central, 2012-11-21)
    The third international conference on the genomic impact of eukaryotic transposable elements (TEs) was held 24 to 28 February 2012 at the Asilomar Conference Center, Pacific Grove, CA, USA. Sponsored in part by the National ...
  • Riley, Monica; Staley, James T.; Danchin, Antoine; Wang, Ting Zhang; Brettin, Thomas S.; Hauser, Loren J.; Land, Miriam L.; Thompson, Linda S. (BioMed Central, 2008-05-06)
    The genome sequence of the sea-ice bacterium Psychromonas ingrahamii 37, which grows exponentially at -12C, may reveal features that help to explain how this extreme psychrophile is able to grow at such low temperatures. ...
  • Field, Dawn; Amaral-Zettler, Linda A.; Cochrane, Guy R.; Cole, James R.; Dawyndt, Peter; Garrity, George M.; Gilbert, Jack A.; Glockner, Frank Oliver; Hirschman, Lynette; Karsch-Mizrachi, Ilene; Klenk, Hans-Peter; Knight, Rob; Kottmann, Renzo; Kyrpides, Nikos C.; Meyer, Folker; San Gil, Inigo; Sansone, Susanna-Assunta; Schriml, Lynn M.; Sterk, Peter; Tatusova, Tatiana; Ussery, David W.; White, Owen; Wooley, John (Public Library of Science, 2011-06-21)
    A vast and rich body of information has grown up as a result of the world's enthusiasm for 'omics technologies. Finding ways to describe and make available this information that maximise its usefulness has become a major ...
  • Yilmaz, Pelin; Gilbert, Jack A.; Knight, Rob; Amaral-Zettler, Linda A.; Karsch-Mizrachi, Ilene; Cochrane, Guy R.; Nakamura, Yasukazu; Sansone, Susanna-Assunta; Glockner, Frank Oliver; Field, Dawn (Nature Publishing Group, 2011-04-07)
    Interest in sampling of diverse environments, combined with advances in high-throughput sequencing, vastly accelerates the pace at which new genomes and metagenomes are generated. For example, as of January 2011, 12 ...
  • Reitzel, Adam M.; Sullivan, James C.; Traylor-Knowles, Nikki; Finnerty, John R. (Marine Biological Laboratory, 2008-06)
    Salt marshes are challenging habitats due to natural variability in key environmental parameters including temperature, salinity, ultraviolet light, oxygen, sulfides, and reactive oxygen species. Compounding this natural ...
  • Akiyoshi, Donna E.; Morrison, Hilary G.; Lei, Shi; Feng, Xiaochuan; Zhang, Quanshun; Corradi, Nicolas; Mayanja, Harriet; Tumwine, James K.; Keeling, Patrick J.; Weiss, Louis M.; Tzipori, Saul (Public Library of Science, 2009-01-09)
    Enterocytozoon bieneusi is the most common microsporidian associated with human disease, particularly in the immunocompromised population. In the setting of HIV infection, it is associated with diarrhea and wasting syndrome. ...
  • Thompson, Janelle R.; Pacocha, Sarah E.; Pharino, Chanathip; Klepac-Ceraj, Vanja; Hunt, Dana E.; Benoit, Jennifer; Sarma-Rupavtarm, Ramahi; Distel, Daniel L.; Polz, Martin F. (2005-01-04)
    The genomic diversity and relative importance of unique genotypes within natural bacterial populations has remained largely unknown. Here, we analyze the diversity and annual dynamics of a group of coastal bacterioplankton ...
  • Poole, Travis L. (Massachusetts Institute of Technology and Woods Hole Oceanographic Institution, 2007-02)
    This thesis introduces an algorithm for inverting for the geoacoustic properties of the seafloor in shallow water. The input data required by the algorithm are estimates of the amplitudes of the normal modes excited by ...
  • Poole, Travis L.; Frisk, George V.; Lynch, James F.; Pierce, Allan D. (Acoustical Society of America, 2008-02)
    This paper introduces a perturbative inversion algorithm for determining sea floor acoustic properties, which uses modal amplitudes as input data. Perturbative inverse methods have been used in the past to estimate bottom ...
  • Poole, Travis L.; Frisk, George V.; Lynch, James F.; Pierce, Allan D. (Acoustical Society of America, 2008-02)
    This paper introduces a perturbative inversion algorithm for determining sea floor acoustic properties, which uses modal amplitudes as input data. Perturbative inverse methods have been used in the past to estimate bottom ...

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