Meeting report : Ocean ‘omics science, technology and cyberinfrastructure : current challenges and future requirements (August 20-23, 2013)
Gilbert, Jack A.
Dick, Gregory J.
Jenkins, Bethany D.
Heidelberg, John F.
Allen, Eric E.
Mackey, Katherine R. M.
DeLong, Edward F.
MetadataShow full item record
The National Science Foundation’s EarthCube End User Workshop was held at USC’s Wrigley Marine Science Center on Catalina Island, California in August 2013. The workshop was designed to explore and characterise the needs and tools available to the community focusing on microbial and physical oceanography research with a particular focus on ‘omic research. The assembled researchers outlined the existing concerns regarding the vast data resources that are being generated, and how we will deal with these resources as their volume and diversity increases. Particular attention was focused on the tools for handling and analysing the existing data, and on the need for the construction and curation of diverse federated databases, as well as development of shared interoperable, “big-data capable” analytical tools. The key outputs from this workshop include (i) critical scientific challenges and cyberinfrastructure constraints, (ii) the current and future ocean ‘omics science grand challenges and questions, and (iii) data management, analytical and associated and cyber-infrastructure capabilities required to meet critical current and future scientific challenges. The main thrust of the meeting and the outcome of this report is a definition of the ‘omics tools, technologies and infrastructures that facilitate continued advance in ocean science biology, marine biogeochemistry, and biological oceanography.
© The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Standards in Genomic Sciences 9 (2014): 1251-1258, doi:10.4056/sigs.5749944.
The following license files are associated with this item:
Showing items related by title, author, creator and subject.
Rocke, Emma; Pachiadaki, Maria G.; Cobban, Alec; Kujawinski, Elizabeth B.; Edgcomb, Virginia P. (Public Library of Science, 2015-04-20)Oceanic protist grazing at mesopelagic and bathypelagic depths, and their subsequent effects on trophic links between eukaryotes and prokaryotes, are not well constrained. Recent studies show evidence of higher than expected ...
Buesseler, Ken O.; Lamborg, Carl H.; Boyd, Philip W.; Lam, Phoebe J.; Trull, Thomas W.; Bidigare, Robert R.; Bishop, James K. B.; Casciotti, Karen L.; Dehairs, Frank; Elskens, Marc; Honda, Makio C.; Karl, David M.; Siegel, David A.; Silver, Mary W.; Steinberg, Deborah K.; Valdes, James R.; Van Mooy, Benjamin A. S.; Wilson, Stephanie E. (American Association for the Advancement of Science, 2007-04-27)
Condon, Robert H.; Graham, William M.; Duarte, Carlos M.; Pitt, Kylie A.; Lucas, Cathy H.; Haddock, Steven H. D.; Sutherland, Kelly R.; Robinson, Kelly L.; Dawson, Michael N.; Decker, Mary Beth; Mills, Claudia E.; Purcell, Jennifer E.; Malej, Alenka; Mianzan, Hermes; Uye, Shin-Ichi; Gelcich, Stefan; Madin, Laurence P. (American Institute of Biological Sciences, 2012-02)During the past several decades, high numbers of gelatinous Zooplankton species have been reported in many estuarine and coastal ecosystems. Coupled with media-driven public perception, a paradigm has evolved in which the ...