Optical map of the genotype A1 WB C6 Giardia lamblia genome isolate
Perry, D. Alexander
Morrison, Hilary G.
Adam, Rodney D.
MetadataShow full item record
The Giardia lamblia genome consists of 12 Mb divided among 5 chromosomes ranging in size from approximately 1 to 4 Mb. The assembled contigs of the genotype A1 isolate, WB, were previously mapped along the 5 chromosomes on the basis of hybridization of plasmid clones representing the contigs to chromosomes separated by PFGE. In the current report, we have generated an MluI optical map of the WB genome to improve the accuracy of the physical map. This has allowed us to correct several assembly errors and to better define the extent of the subtelomeric regions that are not included in the genome assembly.
Author Posting. © The Author(s), 2011. This is the author's version of the work. It is posted here by permission of Elsevier B.V. for personal use, not for redistribution. The definitive version was published in Molecular and Biochemical Parasitology 180 (2011): 112-114, doi:10.1016/j.molbiopara.2011.07.008.
Showing items related by title, author, creator and subject.
Acousto-optic effect compensation for optical determination of the normal velocity distribution associated with acoustic transducer radiation Foote, Kenneth G.; Theobald, Peter D. (Acoustical Society of America, 2015-09-28)The acousto-optic effect, in which an acoustic wave causes variations in the optical index of refraction, imposes a fundamental limitation on the determination of the normal velocity, or normal displacement, distribution ...
Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome Durham, Bryndan P.; Grote, Jana; Whittaker, Kerry A.; Bender, Sara J.; Luo, Haiwei; Grim, Sharon L.; Brown, Julia; Casey, John F.; Dron, Antony; Florez-Leiva, Lennis; Krupke, Andreas; Luria, Catherine M.; Mine, Aric; Nigro, Olivia D.; Pather, Santhiska; Talarmin, Agathe; Wear, Emma; Weber, Thomas S.; Wilson, Jesse; Church, Matthew J.; DeLong, Edward F.; Karl, David M.; Steward, Grieg F.; Eppley, John; Kyrpides, Nikos C.; Schuster, Stephan; Rappe, Michael S. (Genomic Standards Consortium, 2014)Strain HIMB11 is a planktonic marine bacterium isolated from coastal seawater in Kaneohe Bay, Oahu, Hawaii belonging to the ubiquitous and versatile Roseobacter clade of the alphaproteobacterial family Rhodobacteraceae. ...
First autonomous bio-optical profiling float in the Gulf of Mexico reveals dynamic biogeochemistry in deep waters Green, Rebecca E.; Bower, Amy S.; Lugo-Fernandez, Alexis (Public Library of Science, 2014-07-03)Profiling floats equipped with bio-optical sensors well complement ship-based and satellite ocean color measurements by providing highly-resolved time-series data on the vertical structure of biogeochemical processes in ...