Evaluating support for the current classification of eukaryotic diversity
Parfrey, Laura Wegener
Patterson, David J.
Katz, Laura A.
MetadataShow full item record
Perspectives on the classification of eukaryotic diversity have changed rapidly in recent years, as the four eukaryotic groups within the five-kingdom classification—plants, animals, fungi, and protists—have been transformed through numerous permutations into the current system of six ‘‘supergroups.’’ The intent of the supergroup classification system is to unite microbial and macroscopic eukaryotes based on phylogenetic inference. This supergroup approach is increasing in popularity in the literature and is appearing in introductory biology textbooks. We evaluate the stability and support for the current six-supergroup classification of eukaryotes based on molecular genealogies. We assess three aspects of each supergroup: (1) the stability of its taxonomy, (2) the support for monophyly (single evolutionary origin) in molecular analyses targeting a supergroup, and (3) the support for monophyly when a supergroup is included as an out-group in phylogenetic studies targeting other taxa. Our analysis demonstrates that supergroup taxonomies are unstable and that support for groups varies tremendously, indicating that the current classification scheme of eukaryotes is likely premature. We highlight several trends contributing to the instability and discuss the requirements for establishing robust clades within the eukaryotic tree of life.
© 2006 Parfrey et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The definitive version was published in PLoS Genetics 2 (2006): e220, doi:10.1371/journal.pgen.0020220.
The following license files are associated with this item:
Showing items related by title, author, creator and subject.
Parfrey, Laura Wegener; Grant, Jessica; Tekle, Yonas I.; Lasek-Nesselquist, Erica; Morrison, Hilary G.; Sogin, Mitchell L.; Patterson, David J.; Katz, Laura A. (2010-06-01)An accurate reconstruction of the eukaryotic tree of life is essential to identify the innovations underlying the diversity of microbial and macroscopic (e.g. plants and animals) eukaryotes. Previous work has divided ...
Rogers, Laura J.; Moore, Laura J.; Goldstein, Evan B.; Hein, Christopher J.; Lorenzo-Trueba, Jorge; Ashton, Andrew D. (John Wiley & Sons, 2015-12-29)Accelerated sea level rise and the potential for an increase in frequency of the most intense hurricanes due to climate change threaten the vitality and habitability of barrier islands by lowering their relative elevation ...
Dynamic intermediate ocean circulation in the North Atlantic during Heinrich Stadial 1 : a radiocarbon and neodymium isotope perspective Wilson, David J.; Crocket, Kirsty C.; van de Flierdt, Tina; Robinson, Laura F.; Adkins, Jess F. (John Wiley & Sons, 2014-11-20)The last deglaciation was characterized by a series of millennial-scale climate events that have been linked to deep ocean variability. While often implied in interpretations, few direct constraints exist on circulation ...