Defne Zafer

Last Name

Defne

First Name

Zafer

Full item page

Search Results

Now showing 1 - 13 of 13

Salt marsh erosion rates and boundary features in a shallow Bay

(John Wiley & Sons, 2016-10-22) Leonardi, Nicoletta ; Defne, Zafer ; Ganju, Neil K. ; Fagherazzi, Sergio

Herein, we investigate the relationship between wind waves, salt marsh erosion rates, and the planar shape of marsh boundaries by using aerial images and the numerical model Coupled-Ocean-Atmosphere-Wave-Sediment-Transport Modeling System (COAWST). Using Barnegat Bay, New Jersey, as a test site, we found that salt marsh erosion rates maintain a similar trend in time. We also found a significant relationship between salt marsh erosion rates and the shape of marsh boundaries which could be used as a geomorphic indicator of the degradation level of the marsh. Slowly eroding salt marshes are irregularly shaped with fractal dimension higher than rapidly deteriorating marshes. Moreover, for low-wave energy conditions, there is a high probability of isolated and significantly larger than average failures of marsh portions causing a long-tailed distribution of localized erosion rates. Finally, we confirm the existence of a significant relationship between salt marsh erosion rate and wind waves exposure. Results suggest that variations in time in the morphology of salt marsh boundaries could be used to infer changes in frequency and magnitude of external agents.
Spatial distribution of water level impacting back-barrier bays

(European Geosciences Union, 2019-08-20) Aretxabaleta, Alfredo L. ; Ganju, Neil K. ; Defne, Zafer ; Signell, Richard P.

Water level in semi-enclosed bays, landward of barrier islands, is mainly driven by offshore sea level fluctuations that are modulated by bay geometry and bathymetry, causing spatial variability in the ensuing response (transfer). Local wind setup can have a complementary role that depends on wind speed, fetch, and relative orientation of the wind direction and the bay. Bay area and inlet geometry and bathymetry primarily regulate the magnitude of the transfer between open ocean and bay. Tides and short-period offshore oscillations are more damped in the bays than longer-lasting offshore fluctuations, such as a storm surge and sea level rise. We compare observed and modeled water levels at stations in a mid-Atlantic bay (Barnegat Bay) with offshore water level proxies. Observed water levels in Barnegat Bay are compared and combined with model results from the Coupled Ocean–Atmosphere–Wave–Sediment Transport (COAWST) modeling system to evaluate the spatial structure of the water level transfer. Analytical models based on the dimensional characteristics of the bay are used to combine the observed data and the numerical model results in a physically consistent approach. Model water level transfers match observed values at locations inside the bay in the storm frequency band (transfers ranging from 50 %–100 %) and tidal frequencies (10 %–55 %). The contribution of frequency-dependent local setup caused by wind acting along the bay is also considered. The wind setup effect can be comparable in magnitude to the offshore transfer forcing during intense storms. The approach provides transfer estimates for locations inside the bay where observations were not available, resulting in a complete spatial characterization. An extension of the methodology that takes advantage of the ADCIRC tidal database for the east coast of the United States allows for the expansion of the approach to other bay systems. Detailed spatial estimates of water level transfer can inform decisions on inlet management and contribute to the assessment of current and future flooding hazard in back-barrier bays and along mainland shorelines.
Spatially integrative metrics reveal hidden vulnerability of microtidal salt marshes

(Nature Publishig Group, 2017-01-23) Ganju, Neil K. ; Defne, Zafer ; Kirwan, Matthew L. ; Fagherazzi, Sergio ; D’Alpaos, Andrea ; Carniello, Luca

Salt marshes are valued for their ecosystem services, and their vulnerability is typically assessed through biotic and abiotic measurements at individual points on the landscape. However, lateral erosion can lead to rapid marsh loss as marshes build vertically. Marsh sediment budgets represent a spatially integrated measure of competing constructive and destructive forces: a sediment surplus may result in vertical growth and/or lateral expansion, while a sediment deficit may result in drowning and/or lateral contraction. Here we show that sediment budgets of eight microtidal marsh complexes consistently scale with areal unvegetated/vegetated marsh ratios (UVVR) suggesting these metrics are broadly applicable indicators of microtidal marsh vulnerability. All sites are exhibiting a sediment deficit, with half the sites having projected lifespans of less than 350 years at current rates of sea-level rise and sediment availability. These results demonstrate that open-water conversion and sediment deficits are holistic and sensitive indicators of salt marsh vulnerability.
Physical response of a back-barrier estuary to a post-tropical cyclone

(John Wiley & Sons, 2017-07-27) Beudin, Alexis ; Ganju, Neil K. ; Defne, Zafer ; Aretxabaleta, Alfredo L.

This paper presents a modeling investigation of the hydrodynamic and sediment transport response of Chincoteague Bay (VA/MD, USA) to Hurricane Sandy using the Coupled Ocean-Atmosphere-Wave-Sediment-Transport (COAWST) modeling system. Several simulation scenarios with different combinations of remote and local forces were conducted to identify the dominant physical processes. While 80% of the water level increase in the bay was due to coastal sea level at the peak of the storm, a rich spatial and temporal variability in water surface slope was induced by local winds and waves. Local wind increased vertical mixing, horizontal exchanges, and flushing through the inlets. Remote waves (swell) enhanced southward flow through wave setup gradients between the inlets, and increased locally generated wave heights. Locally generated waves had a negligible effect on water level but reduced the residual flow up to 70% due to enhanced apparent roughness and breaking-induced forces. Locally generated waves dominated bed shear stress and sediment resuspension in the bay. Sediment transport patterns mirrored the interior coastline shape and generated deposition on inundated areas. The bay served as a source of fine sediment to the inner shelf, and the ocean-facing barrier island accumulated sand from landward-directed overwash. Despite the intensity of the storm forcing, the bathymetric changes in the bay were on the order of centimeters. This work demonstrates the spectrum of responses to storm forcing, and highlights the importance of local and remote processes on back-barrier estuarine function.
A wetting and drying scheme for ROMS

(Elsevier B.V., 2013-05-24) Warner, John C. ; Defne, Zafer ; Haas, Kevin A. ; Arango, Hernan G.

The processes of wetting and drying have many important physical and biological impacts on shallow water systems. Inundation and dewatering effects on coastal mud flats and beaches occur on various time scales ranging from storm surge, periodic rise and fall of the tide, to infragravity wave motions. To correctly simulate these physical processes with a numerical model requires the capability of the computational cells to become inundated and dewatered. In this paper, we describe a method for wetting and drying based on an approach consistent with a cell-face blocking algorithm. The method allows water to always flow into any cell, but prevents outflow from a cell when the total depth in that cell is less than a user defined critical value. We describe the method, the implementation into the three-dimensional Regional Oceanographic Modeling System (ROMS), and exhibit the new capability under three scenarios: an analytical expression for shallow water flows, a dam break test case, and a realistic application to part of a wetland area along the Georgia Coast, USA.
Toward a comprehensive water-quality modeling of Barnegat Bay : development of ROMS to WASP coupler

(Coastal Education and Research Foundation, 2017-11-02) Defne, Zafer ; Spitz, Frederick J. ; DePaul, Vincent ; Wool, Tim A.

The Regional Ocean Modeling System (ROMS) has been coupled with the Water Quality Analysis Simulation Program (WASP) to be used in a comprehensive analysis of water quality in Barnegat Bay, New Jersey. The coupler can spatially aggregate hydrodynamic information in ROMS cells into larger WASP segments. It can also be used to resample ROMS output at a finer temporal scale to meet WASP time-stepping requirements. The coupler aggregates flow components, temperature, and salinity in ROMS output for input to WASP via a hydrodynamic linkage file. The coupler was tested initially with idealized cases designed to verify the water mass balance and conservation of constituent mass using one-to-one and one-to-many connectivity options between segments. A realistic example from the Toms River embayment, a subdomain of Barnegat Bay, was used to demonstrate the functionality of the coupling. A WASP eutrophication model accounting for dissolved oxygen (DO), nitrogen, and constant phytoplankton concentrations was applied to explore the distribution and trends in DO and nitrogen in the embayment for the period of July–August 2012. Results of DO modeling indicate satisfactory agreement with measurements collected at in-bay stations and also indicate that this coupled approach, despite substantial differences in spatiotemporal discretization between the models, provides adequate predictive capabilities.
Role of tidal wetland stability in lateral fluxes of particulate organic matter and carbon

(American Geophysical Union, 2019-04-23) Ganju, Neil K. ; Defne, Zafer ; Elsey-Quirk, Tracy ; Moriarty, Julia M.

Tidal wetland fluxes of particulate organic matter and carbon (POM, POC) are important terms in global budgets but remain poorly constrained. Given the link between sediment fluxes and wetland stability, POM and POC fluxes should also be related to stability. We measured POM and POC fluxes in eight microtidal salt marsh channels, with net POM fluxes ranging between −121 ± 33 (export) and 102 ± 28 (import) g OM·m−2·year−1 and net POC fluxes ranging between −52 ± 14 and 43 ± 12 g C·m−2·year−1. A regression employing two measures of stability, the unvegetated‐vegetated marsh ratio (UVVR) and elevation, explained >95% of the variation in net fluxes. The regression indicates that marshes with lower elevation and UVVR import POM and POC while higher elevation marshes with high UVVR export POM and POC. We applied these relationships to marsh units within Barnegat Bay, New Jersey, USA, finding a net POM import of 2,355 ± 1,570 Mg OM/year (15 ± 10 g OM·m−2·year−1) and a net POC import of 1,263 ± 632 Mg C/year (8 ± 4 g C·m−2·year−1). The magnitude of this import was similar to an estimate of POM and POC export due to edge erosion (−2,535 Mg OM/year and − 1,291 Mg C/year), suggesting that this system may be neutral from a POM and POC perspective. In terms of a net budget, a disintegrating wetland should release organic material, while a stable wetland should trap material. This study quantifies that concept and demonstrates a linkage between POM/POC flux and geomorphic stability.
Evolution of Mid-Atlantic coastal and back-barrier estuary environments in response to a hurricane : implications for barrier-estuary connectivity

(Springer, 2015-12-29) Miselis, Jennifer L. ; Andrews, Brian D. ; Nicholson, Robert S. ; Defne, Zafer ; Ganju, Neil K. ; Navoy, Anthony

Assessments of coupled barrier island-estuary storm response are rare. Hurricane Sandy made landfall during an investigation in Barnegat Bay-Little Egg Harbor estuary that included water quality monitoring, geomorphologic characterization, and numerical modeling; this provided an opportunity to characterize the storm response of the barrier island-estuary system. Barrier island morphologic response was characterized by significant changes in shoreline position, dune elevation, and beach volume; morphologic changes within the estuary were less dramatic with a net gain of only 200,000 m3 of sediment. When observed, estuarine deposition was adjacent to the back-barrier shoreline or collocated with maximum estuary depths. Estuarine sedimentologic changes correlated well with bed shear stresses derived from numerically simulated storm conditions, suggesting that change is linked to winnowing from elevated storm-related wave-current interactions rather than deposition. Rapid storm-related changes in estuarine water level, turbidity, and salinity were coincident with minima in island and estuarine widths, which may have influenced the location of two barrier island breaches. Barrier-estuary connectivity, or the transport of sediment from barrier island to estuary, was influenced by barrier island land use and width. Coupled assessments like this one provide critical information about storm-related coastal and estuarine sediment transport that may not be evident from investigations that consider only one component of the coastal system.
Identifying salt marsh shorelines from remotely sensed elevation data and imagery

(MDPI, 2019-07-31) Farris, Amy S. ; Defne, Zafer ; Ganju, Neil K.

Salt marshes are valuable ecosystems that are vulnerable to lateral erosion, submergence, and internal disintegration due to sea level rise, storms, and sediment deficits. Because many salt marshes are losing area in response to these factors, it is important to monitor their lateral extent at high resolution over multiple timescales. In this study we describe two methods to calculate the location of the salt marsh shoreline. The marsh edge from elevation data (MEED) method uses remotely sensed elevation data to calculate an objective proxy for the shoreline of a salt marsh. This proxy is the abrupt change in elevation that usually characterizes the seaward edge of a salt marsh, designated the “marsh scarp.” It is detected as the maximum slope along a cross-shore transect between mean high water and mean tide level. The method was tested using lidar topobathymetric and photogrammetric elevation data from Massachusetts, USA. The other method to calculate the salt marsh shoreline is the marsh edge by image processing (MEIP) method which finds the unvegetated/vegetated line. This method applies image classification techniques to multispectral imagery and elevation datasets for edge detection. The method was tested using aerial imagery and coastal elevation data from the Plum Island Estuary in Massachusetts, USA. Both methods calculate a line that closely follows the edge of vegetation seen in imagery. The two methods were compared to each other using high resolution unmanned aircraft systems (UAS) data, and to a heads-up digitized shoreline. The root-mean-square deviation was 0.6 meters between the two methods, and less than 0.43 meters from the digitized shoreline. The MEIP method was also applied to a lower resolution dataset to investigate the effect of horizontal resolution on the results. Both methods provide an accurate, efficient, and objective way to track salt marsh shorelines with spatially intensive data over large spatial scales, which is necessary to evaluate geomorphic change and wetland vulnerability.
Estimating connectivity of hard clam (Mercenaria mercenaria) and eastern oyster (Crassostrea virginica) larvae in Barnegat Bay

(MDPI, 2019-06-01) Goodwin, Jacob D. ; Munroe, Daphne M. ; Defne, Zafer ; Ganju, Neil K. ; Vasslides, James

Many marine organisms have a well-known adult sessile stage. Unfortunately, our lack of knowledge regarding their larval transient stage hinders our understanding of their basic ecology and connectivity. Larvae can have swimming behavior that influences their transport within the marine environment. Understanding the larval stage provides insight into population connectivity that can help strategically identify areas for restoration. Current techniques for understanding the larval stage include modeling that combines particle attributes (e.g., larval behavior) with physical processes of water movement to contribute to our understanding of connectivity trends. This study builds on those methods by using a previously developed retention clock matrix (RCM) to illustrate time dependent connectivity of two species of shellfish between areas and over a range of larval durations. The RCM was previously used on physical parameters but we expand the concept by applying it to biology. A new metric, difference RCM (DRCM), is introduced to quantify changes in connectivity under different scenarios. Broad spatial trends were similar for all behavior types with a general south to north progression of particles. The DRCMs illustrate differences between neutral particles and those with behavior in northern regions where stratification was higher, indicating that larval behavior influenced transport. Based on these findings, particle behavior led to small differences (north to south movement) in transport patterns in areas with higher salinity gradients (the northern part of the system) compared to neutral particles. Overall, the dominant direction for particle movement was from south to north, which at times was enhanced by winds from the south. Clam and oyster restoration in the southern portion of Barnegat Bay could serve as a larval supply for populations in the north. These model results show that coupled hydrodynamic and particle tracking models have implications for fisheries management and restoration activities.
Tidal stream energy site assessment via three-dimensional model and measurements

( 2012-08-12) Work, Paul A. ; Haas, Kevin A. ; Defne, Zafer ; Gay, Thomas

A methodology for assessment of the potential impacts of extraction of energy associated with astronomical tides is described and applied to a site on the Beaufort River in coastal South Carolina, U.S.A. Despite its name, the site features negligible freshwater inputs; like many in the region, it is a tidal estuary that resembles a river. A three-dimensional, numerical, hydrodynamic model was applied for a period exceeding a lunar month, allowing quantification of harmonic constituents of water level and velocity, and comparison to values derived from measurements, recorded at a location within the model domain. The measurement campaign included surveys of bathymetry and velocity fields during ebb and flood portions of a tidal cycle for model validation. Potential far-field impacts of a generic tidal energy conversion device were simulated by introducing an additional drag force in the model to enhance dissipation, resulting in 10-60% dissipation of the pre-existing kinetic power within a flow cross-section. The model reveals e ffects of the dissipation on water levels and velocities in adjacent areas, which are relatively small even at the 60% dissipation level. A method is presented to estimate the optimal vertical location for the energy conversion device and the potential power sacrificed by moving to a di fferent altitude.
Estimating time-dependent connectivity in marine systems

(John Wiley & Sons, 2016-02-04) Defne, Zafer ; Ganju, Neil K. ; Aretxabaleta, Alfredo L.

Hydrodynamic connectivity describes the sources and destinations of water parcels within a domain over a given time. When combined with biological models, it can be a powerful concept to explain the patterns of constituent dispersal within marine ecosystems. However, providing connectivity metrics for a given domain is a three-dimensional problem: two dimensions in space to define the sources and destinations and a time dimension to evaluate connectivity at varying temporal scales. If the time scale of interest is not predefined, then a general approach is required to describe connectivity over different time scales. For this purpose, we have introduced the concept of a “retention clock” that highlights the change in connectivity through time. Using the example of connectivity between protected areas within Barnegat Bay, New Jersey, we show that a retention clock matrix is an informative tool for multitemporal analysis of connectivity.
Quantifying the residence time and flushing characteristics of a shallow, back-barrier estuary : application of hydrodynamic and particle tracking models

(Springer, 2014-09-23) Defne, Zafer ; Ganju, Neil K.

Estuarine residence time is a major driver of eutrophication and water quality. Barnegat Bay-Little Egg Harbor (BB-LEH), New Jersey, is a lagoonal back-barrier estuary that is subject to anthropogenic pressures including nutrient loading, eutrophication, and subsequent declines in water quality. A combination of hydrodynamic and particle tracking modeling was used to identify the mechanisms controlling flushing, residence time, and spatial variability of particle retention. The models demonstrated a pronounced northward subtidal flow from Little Egg Inlet in the south to Pt. Pleasant Canal in the north due to frictional effects in the inlets, leading to better flushing of the southern half of the estuary and particle retention in the northern estuary. Mean residence time for BB-LEH was 13 days but spatial variability was between ∼0 and 30 days depending on the initial particle location. Mean residence time with tidal forcing alone was 24 days (spatial variability between ∼0 and 50 days); the tides were relatively inefficient in flushing the northern end of the Bay. Scenarios with successive exclusion of physical processes from the models revealed that meteorological and remote offshore forcing were stronger drivers of exchange than riverine inflow. Investigations of water quality and eutrophication should take into account spatial variability in hydrodynamics and residence time in order to better quantify the roles of nutrient loading, production, and flushing.

Defne Zafer

Last Name

First Name

ORCID

Filters

Author

Subject

Date

Type

Has files

Settings

Sort By

Results per page

Search Results